Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0155600 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 0.0e+00 1176.0 604 100.0
Os07g0156732 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 0.0e+00 1176.0 604 100.0
Os07g0157401 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 0.0e+00 1176.0 604 100.0
Zm00001eb119690 Zea mays HOM05D003571 ORTHO05D004193 8.6e-268 926.8 604 78.6
Os03g0700800 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 8.3e-178 627.9 608 57.7
HPP92_012165 Vanilla planifolia HOM05D003571 ORTHO05D004193 7.3e-134 481.9 631 45.5
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 3.1e-132 476.5 623 48.0
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 4.6e-128 462.6 623 47.5
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 1.6e-125 454.1 627 47.0
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 3.1e-124 449.9 624 45.2
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 9.0e-124 448.4 626 45.0
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 2.6e-123 446.8 625 45.1
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 3.4e-123 446.4 625 44.6
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 7.6e-123 445.3 628 45.4
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 9.9e-123 444.9 624 45.2
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 1.7e-122 444.1 627 45.0
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 2.9e-122 443.4 624 45.4
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 1.1e-121 441.4 624 44.9
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 7.1e-121 438.7 633 44.2
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 9.3e-121 438.3 622 45.3
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 4.6e-120 436.0 623 45.3
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 6.0e-120 435.6 608 44.6
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 7.9e-120 435.3 629 46.6
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 1.0e-119 434.9 626 44.9
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.0e-119 434.9 630 44.6
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.3e-119 434.5 626 46.2
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.8e-119 434.1 626 45.8
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 6.7e-119 432.2 636 43.9
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 6.7e-119 432.2 630 43.7
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 3.3e-118 429.9 625 44.3
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 4.3e-118 429.5 637 45.4
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 5.6e-118 429.1 628 46.0
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 7.4e-118 428.7 625 45.1
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 1.6e-117 427.6 624 44.1
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 2.8e-117 426.8 627 45.0
CiPaw.10G133100 Carya illinoinensis HOM05D003571 ORTHO05D004193 1.8e-116 424.1 631 45.2
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 4.0e-116 422.9 676 42.0
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 9.0e-116 421.8 627 45.0
Cpa.g.sc390.5 Carica papaya HOM05D003571 ORTHO05D004193 1.7e-114 417.5 616 44.0
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 1.7e-114 417.5 628 42.8
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 2.9e-114 416.8 630 43.3
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 2.9e-114 416.8 631 43.7
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 6.4e-114 415.6 620 44.2
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 8.4e-114 415.2 634 43.7
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 1.4e-113 414.5 644 42.9
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 2.5e-113 413.7 649 42.8
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.5e-113 413.7 621 43.5
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 3.2e-113 413.3 620 43.1
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 4.2e-113 412.9 620 43.1
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 5.5e-113 412.5 656 43.0
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 5.5e-113 412.5 680 41.9
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 5.5e-113 412.5 652 42.9
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 5.5e-113 412.5 627 44.3
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 7.1e-113 412.1 637 43.6
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 1.2e-112 411.4 623 42.9
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 1.6e-112 411.0 634 42.4
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 4.6e-112 409.5 627 42.9
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 6.0e-112 409.1 626 42.3
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 6.0e-112 409.1 626 42.3
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 6.0e-112 409.1 657 42.6
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 7.9e-112 408.7 698 40.0
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 3.0e-111 406.8 675 41.3
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 5.1e-111 406.0 629 42.3
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 5.1e-111 406.0 679 41.1
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 6.7e-111 405.6 634 42.3
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.1e-110 404.8 679 40.9
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.1e-110 404.8 630 43.0
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 1.5e-110 404.4 666 41.9
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 1.9e-110 404.1 632 42.7
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 3.3e-110 403.3 624 44.2
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 3.3e-110 403.3 639 41.9
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 5.6e-110 402.5 637 43.0
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 7.4e-110 402.1 661 41.9
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.3e-109 401.4 628 43.2
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.3e-109 401.4 620 42.6
Aa31LG1G21830 Aethionema arabicum HOM05D003571 ORTHO05D004193 1.6e-109 401.0 616 43.3
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 2.1e-109 400.6 620 42.6
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 2.1e-109 400.6 630 42.7
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 2.8e-109 400.2 626 41.7
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 4.8e-109 399.4 613 42.7
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 6.2e-109 399.1 670 40.3
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 1.1e-108 398.3 624 41.7
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 1.4e-108 397.9 615 42.8
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 1.8e-108 397.5 677 40.3
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 1.8e-108 397.5 624 42.5
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 3.1e-108 396.7 618 43.0
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 4.0e-108 396.4 628 42.7
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 9.0e-108 395.2 626 41.9
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 1.2e-107 394.8 625 42.6
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 3.4e-107 393.3 621 41.7
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 3.4e-107 393.3 622 42.4
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 7.6e-107 392.1 637 42.7
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 1.0e-106 391.7 625 41.6
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 1.3e-106 391.3 625 41.8
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 2.2e-106 390.6 615 43.1
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 2.9e-106 390.2 628 41.1
DCAR_020834 Daucus carota HOM05D003571 ORTHO05D004193 6.5e-106 389.0 629 42.3
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 8.4e-106 388.7 625 41.4
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 2.5e-105 387.1 635 42.5
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 7.1e-105 385.6 620 40.6
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 2.1e-104 384.0 629 42.0
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 3.5e-104 383.3 636 42.6
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 7.9e-104 382.1 623 41.3
Sc02g0001770 Simmondsia chinensis HOM05D003571 ORTHO05D004193 1.0e-103 381.7 610 42.8
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 1.3e-103 381.3 630 41.4
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 1.8e-103 380.9 612 41.0
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 1.8e-103 380.9 623 40.9
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 2.3e-103 380.6 625 40.6
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 1.5e-102 377.9 633 41.2
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 2.5e-102 377.1 633 41.1
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 2.5e-102 377.1 633 41.1
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 4.3e-102 376.3 631 40.4
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 2.2e-101 374.0 615 41.6
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 4.8e-101 372.9 634 40.9
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 4.8e-101 372.9 634 40.9
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 1.8e-100 370.9 634 41.0
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 2.4e-100 370.5 639 39.9
DCAR_009299 Daucus carota HOM05D003571 ORTHO05D004193 9.0e-100 368.6 634 41.3
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 2.0e-99 367.5 660 39.4
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 2.6e-99 367.1 632 41.9
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 2.6e-99 367.1 626 40.6
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 3.4e-99 366.7 630 39.5
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 3.8e-98 363.2 625 41.0
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 2.5e-97 360.5 617 41.8
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 6.1e-96 355.9 619 41.4
ECA238G4675 Erigeron canadensis HOM05D003571 ORTHO05D004193 1.8e-95 354.4 609 39.4
CDE06G0018 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 3.0e-95 353.6 619 38.8
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 1.1e-94 351.7 614 41.0
SEGI_08907 Sequoiadendron giganteum HOM05D003571 ORTHO05D004193 2.0e-94 350.9 667 38.8
MSTRG.26704 Avicennia marina HOM05D003571 ORTHO05D004193 2.5e-94 350.5 634 40.2
vmacro20027 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 4.3e-94 349.7 630 40.2
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 3.7e-93 346.7 611 40.9
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 6.3e-93 345.9 637 38.8
Lsat_1_v5_gn_2_106480 Lactuca sativa HOM05D003571 ORTHO05D004193 5.0e-90 336.3 615 38.5
Rhsim04G0146300 Rhododendron simsii HOM05D003571 ORTHO05D004193 8.5e-90 335.5 640 38.4
HanXRQChr07g0195371 Helianthus annuus HOM05D003571 ORTHO05D004193 4.2e-89 333.2 615 39.8
HanXRQChr01g0027351 Helianthus annuus HOM05D003571 ORTHO05D004193 2.3e-87 327.4 626 38.7
Lsat_1_v5_gn_1_53261 Lactuca sativa HOM05D003571 ORTHO05D004193 3.0e-87 327.0 627 39.7
HanXRQChr11g0350181 Helianthus annuus HOM05D003571 ORTHO05D004193 1.5e-86 324.7 605 39.3
Glyma.13G145100 Glycine max HOM05D003571 ORTHO05D004193 2.8e-85 320.5 529 41.6
PSO801G0607 Papaver somniferum HOM05D003571 ORTHO05D004193 3.7e-85 320.1 631 38.8
Actinidia31342 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.8e-84 317.8 547 40.2
Ciclev10010923m.g Citrus clementina HOM05D003571 ORTHO05D004193 3.5e-83 313.5 636 36.8
PSO339G5477 Papaver somniferum HOM05D003571 ORTHO05D004193 1.0e-82 312.0 633 38.4
CAN.G363.21 Capsicum annuum HOM05D003571 ORTHO05D004193 1.4e-76 291.6 544 37.1
AagrBONN_evm.TU.Sc2ySwM_368.249 Anthoceros agrestis HOM05D003571 ORTHO05D004193 6.1e-72 276.2 653 34.8
Mapoly0001s0226 Marchantia polymorpha HOM05D003571 ORTHO05D004193 1.0e-71 275.4 691 32.7
Pp3c27_2050 Physcomitrium patens HOM05D003571 ORTHO05D004193 6.8e-71 272.7 700 33.1
SMO334G0103 Selaginella moellendorffii HOM05D003571 ORTHO05D004193 5.3e-68 263.1 614 35.2
Pp3c16_16830 Physcomitrium patens HOM05D003571 ORTHO05D004193 7.0e-68 262.7 701 34.1
Nitab4.5_0027568g0010 Nicotiana tabacum HOM05D003571 ORTHO05D004193 8.0e-56 222.6 516 34.5
Dinv35764 Davidia involucrata HOM05D003571 ORTHO05D004193 1.6e-51 208.4 395 35.4
GSVIVG01025701001 Vitis vinifera HOM05D003571 ORTHO05D004193 4.5e-51 206.8 178 58.4
CDE04G1686 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 1.1e-49 202.2 157 61.1
Lalb_Chr01g0018771 Lupinus albus HOM05D003571 ORTHO05D004193 2.0e-46 191.4 443 33.9
Actinidia14517 Actinidia chinensis HOM05D003571 ORTHO05D004193 2.3e-34 151.4 512 28.5
Zm00001eb247680 Zea mays HOM05D003571 ORTHO05D442597 9.2e-28 129.4 279 34.4
Nitab4.5_0000101g0260 Nicotiana tabacum HOM05D003571 ORTHO05D004193 6.8e-23 113.2 107 60.7
Actinidia13081 Actinidia chinensis HOM05D003571 ORTHO05D004193 2.5e-17 94.7 103 48.5
CDE04G0273 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 9.6e-17 92.8 317 30.3
Cfa012856 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.8e-16 91.3 58 77.6
Cfa005484 Carpinus fangiana HOM05D003571 ORTHO05D004193 9.0e-15 86.3 58 75.9
Cpa.g.sc390.2 Carica papaya HOM05D003571 ORTHO05D004193 1.3e-13 82.4 46 91.3
Peaxi162Scf00395g00044 Petunia axillaris HOM05D003571 ORTHO05D004193 1.7e-13 82.0 61 70.5
Cre07.g315200 Chlamydomonas reinhardtii HOM05D000702 ORTHO05D004193 2.2e-13 81.6 169 33.1
unitig_0.g686 Utricularia gibba HOM05D003571 ORTHO05D004193 1.4e-12 79.0 169 35.5
Sopen09g001380 Solanum pennellii HOM05D003571 ORTHO05D004193 4.2e-12 77.4 291 28.9
GSVIVG01025700001 Vitis vinifera HOM05D003571 ORTHO05D004193 7.3e-09 66.6 49 55.1
Haze_17181 Corylus avellana HOM05D000530 ORTHO05D003341 6.9e-07 60.1 166 29.5


User provided reference genes

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