Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 0.0e+00 1476.1 762 100.0
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 3.0e-257 892.1 762 63.3
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 2.5e-240 835.9 700 64.0
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 1.1e-187 661.0 762 50.0
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.7e-101 374.0 461 48.4
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 1.6e-85 321.6 326 53.7
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.4e-81 307.8 272 61.0
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.1e-70 272.3 717 30.8
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 2.3e-55 221.5 738 26.8
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 6.6e-55 219.9 729 27.0
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.5e-54 218.0 748 26.9
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 1.2e-53 215.7 684 28.5
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 2.1e-53 214.9 577 32.1
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 6.1e-53 213.4 771 27.1
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 8.0e-53 213.0 714 26.2
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.3e-52 211.5 838 24.8
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 6.8e-52 209.9 696 28.2
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 9.8e-51 206.1 594 29.6
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 4.9e-50 203.8 821 26.6
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 6.3e-50 203.4 703 28.4
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 8.3e-50 203.0 697 27.8
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 9.2e-49 199.5 770 26.9
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.5e-48 197.6 753 25.8
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 4.5e-48 197.2 670 29.3
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 7.8e-48 196.4 758 26.5
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 1.0e-47 196.1 744 25.8
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 1.9e-46 191.8 745 26.7
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 3.3e-46 191.0 763 26.3
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 7.3e-46 189.9 684 27.9
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.2e-45 189.1 733 26.2
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 1.6e-45 188.7 679 27.7
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 3.6e-45 187.6 675 28.9
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 3.6e-45 187.6 745 27.4
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 4.7e-45 187.2 766 25.8
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 8.0e-45 186.4 733 26.1
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 8.0e-45 186.4 728 26.5
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 8.0e-45 186.4 710 25.4
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 8.0e-45 186.4 786 26.1
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 1.0e-44 186.0 696 26.6
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 1.4e-44 185.7 725 27.3
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 1.8e-44 185.3 726 26.9
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 3.1e-44 184.5 784 25.6
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 4.0e-44 184.1 659 27.2
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 6.8e-44 183.3 744 25.5
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.2e-43 182.6 765 25.4
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.2e-43 182.6 743 25.7
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.5e-43 182.2 714 24.9
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.5e-43 182.2 691 26.3
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 2.6e-43 181.4 726 25.9
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 5.8e-43 180.3 668 26.9
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 7.5e-43 179.9 743 26.8
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 9.8e-43 179.5 774 25.7
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.3e-42 179.1 702 25.6
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.3e-42 179.1 676 26.9
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 1.3e-42 179.1 836 25.2
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.3e-42 179.1 838 25.5
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 2.9e-42 177.9 782 25.2
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.9e-42 177.9 681 26.0
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.4e-42 176.8 725 26.2
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 8.3e-42 176.4 743 26.0
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 8.3e-42 176.4 679 27.7
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 1.9e-41 175.3 635 27.7
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 1.9e-41 175.3 635 27.7
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 4.1e-41 174.1 687 25.8
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 4.1e-41 174.1 741 25.4
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 4.1e-41 174.1 767 25.3
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 7.0e-41 173.3 835 25.7
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 2.0e-40 171.8 747 26.5
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 2.7e-40 171.4 749 26.3
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 2.7e-40 171.4 729 26.1
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.5e-40 171.0 753 23.2
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 4.6e-40 170.6 762 25.5
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 2.3e-39 168.3 711 26.7
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.1e-38 166.0 704 24.9
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.1e-38 166.0 666 26.6
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 3.3e-38 164.5 720 26.0
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 5.6e-38 163.7 737 25.6
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 1.2e-37 162.5 790 24.8
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 1.6e-37 162.2 683 26.1
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 2.1e-37 161.8 697 25.1
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.6e-37 161.0 691 25.9
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 6.2e-37 160.2 729 25.1
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.1e-36 159.5 653 24.5
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 6.8e-36 156.8 729 25.4
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 6.8e-36 156.8 726 25.9
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.5e-35 155.6 745 24.6
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 1.5e-35 155.6 619 24.7
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 7.5e-35 153.3 429 28.7
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 6.4e-34 150.2 750 25.5
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 6.4e-34 150.2 514 27.2
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 8.3e-34 149.8 558 26.7
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 1.4e-33 149.1 533 26.5
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.9e-33 148.7 688 25.1
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 9.2e-33 146.4 694 24.1
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 9.2e-33 146.4 712 25.8
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.2e-32 146.0 700 27.1
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 3.5e-32 144.4 773 24.6
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 3.5e-32 144.4 449 27.2
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.0e-31 142.9 749 22.8
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 1.3e-31 142.5 459 28.1
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 5.1e-31 140.6 543 24.9
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 6.6e-31 140.2 491 27.7
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 6.6e-31 140.2 607 25.4
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 8.6e-31 139.8 687 24.6
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 2.5e-30 138.3 614 24.9
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 4.3e-30 137.5 471 27.8
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 5.6e-30 137.1 687 24.3
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 8.1e-29 133.3 766 24.2
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.3e-28 131.7 765 24.2
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 3.1e-28 131.3 617 26.7
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 3.4e-27 127.9 468 26.5
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 3.4e-27 127.9 570 25.6
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 5.8e-27 127.1 722 24.7
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 2.2e-26 125.2 695 24.0
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 2.9e-26 124.8 696 22.8
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 4.9e-26 124.0 584 25.0
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.4e-25 122.5 477 26.8
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 5.4e-25 120.6 477 26.6
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 5.4e-25 120.6 477 26.6
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 7.1e-25 120.2 750 24.8
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 9.2e-25 119.8 687 23.4
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 9.2e-25 119.8 592 24.7
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 7.8e-24 116.7 496 26.2
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 5.6e-22 110.5 563 24.9
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.1e-21 108.6 788 22.6
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 6.2e-21 107.1 575 24.2
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 8.1e-21 106.7 612 23.9
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 3.1e-20 104.8 626 22.7
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 6.8e-20 103.6 456 25.0
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 8.9e-20 103.2 131 42.0
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.6e-19 101.7 492 26.2
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 1.3e-18 99.4 717 22.9
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 6.4e-18 97.1 644 22.8
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 8.4e-18 96.7 709 22.6
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 5.4e-17 94.0 508 24.2
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 3.5e-16 91.3 683 23.6
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 1.3e-15 89.4 630 21.6
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 2.3e-15 88.6 425 24.7
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 2.3e-15 88.6 347 26.5
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 3.9e-15 87.8 109 40.4
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 9.6e-14 83.2 688 21.7
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 3.6e-13 81.3 707 22.3
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 3.6e-13 81.3 266 28.6
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 1.1e-12 79.7 677 21.0
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.1e-12 78.2 267 27.3
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 6.9e-12 77.0 342 24.9
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 6.9e-12 77.0 717 23.2
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 1.2e-11 76.3 776 21.9
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 2.6e-11 75.1 553 22.1
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 3.4e-11 74.7 159 30.8
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 7.6e-11 73.6 480 22.5
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 2.2e-10 72.0 73 50.7
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 2.9e-10 71.6 347 24.5
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.4e-09 69.3 735 19.9
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 2.4e-09 68.6 165 30.9
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 4.2e-09 67.8 116 34.5
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.7e-08 65.1 116 36.2
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 4.6e-08 64.3 291 24.4
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 3.0e-07 61.6 289 24.6
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 5.1e-07 60.8 273 24.9
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 5.1e-07 60.8 69 47.8
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.1e-06 59.7 69 44.9
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.5e-06 59.3 52 50.0
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.5e-06 58.5 125 33.6
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 4.3e-06 57.8 57 47.4
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 5.6e-06 57.4 586 22.2
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 5.6e-06 57.4 73 41.1
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 9.6e-06 56.6 118 36.4


User provided reference genes

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