Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.1e-55 218.8 108 100.0
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 8.2e-44 180.3 107 83.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.3e-41 172.9 106 75.5
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 9.3e-40 166.8 106 70.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.2e-39 166.4 106 69.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-39 165.2 104 71.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.6e-39 164.5 106 69.8
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.0e-39 164.1 104 70.2
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 7.9e-39 163.7 106 70.8
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.9e-39 163.7 106 71.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.3e-38 162.9 106 70.8
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.8e-38 162.5 106 69.8
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.8e-38 162.5 106 69.8
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.8e-38 162.5 106 69.8
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.3e-38 162.2 106 67.9
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.3e-38 162.2 106 67.9
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.3e-38 162.2 106 70.8
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 5.1e-38 161.0 106 68.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 6.7e-38 160.6 106 68.9
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 6.7e-38 160.6 109 68.8
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 6.7e-38 160.6 106 69.8
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.7e-38 160.6 106 69.8
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.1e-37 159.8 107 69.2
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.5e-37 159.5 106 67.9
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.9e-37 159.1 106 67.9
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.9e-37 159.1 106 68.9
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.9e-37 159.1 107 68.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.3e-37 158.3 105 68.6
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 4.3e-37 157.9 106 66.0
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 5.7e-37 157.5 107 69.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 7.4e-37 157.1 106 67.9
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.3e-36 156.4 105 68.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.3e-36 156.4 108 67.6
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.3e-36 156.4 96 71.9
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.3e-36 156.4 96 71.9
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.6e-36 156.0 106 67.0
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.2e-36 155.6 93 73.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.2e-36 155.6 93 73.1
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-36 155.6 109 67.0
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-36 155.6 109 67.0
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.2e-36 155.6 109 67.0
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 2.2e-36 155.6 106 67.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.8e-36 155.2 106 67.0
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.8e-36 155.2 109 67.0
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 4.8e-36 154.5 106 67.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 6.3e-36 154.1 97 71.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 8.2e-36 153.7 105 67.6
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 8.2e-36 153.7 105 67.6
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 8.2e-36 153.7 106 66.0
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 8.2e-36 153.7 106 66.0
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 8.2e-36 153.7 106 66.0
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 8.2e-36 153.7 93 73.1
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.1e-35 153.3 108 67.6
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.1e-35 153.3 110 67.3
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.1e-35 153.3 93 73.1
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.4e-35 152.9 104 67.3
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.4e-35 152.9 106 65.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.4e-35 152.9 106 65.1
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-35 152.5 109 66.1
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.4e-35 152.1 109 66.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.4e-35 152.1 109 66.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 2.4e-35 152.1 103 67.0
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.1e-35 151.8 111 66.7
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.1e-35 151.8 106 65.1
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.1e-35 151.8 110 67.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 3.1e-35 151.8 106 63.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 4.1e-35 151.4 108 64.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.1e-35 151.4 106 64.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 4.1e-35 151.4 93 72.0
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 6.9e-35 150.6 106 65.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.9e-35 150.6 93 71.0
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 6.9e-35 150.6 106 64.2
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 9.0e-35 150.2 101 67.3
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 9.0e-35 150.2 107 65.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 9.0e-35 150.2 101 67.3
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.2e-34 149.8 107 66.4
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.5e-34 149.4 105 64.8
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.5e-34 149.4 108 66.7
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.5e-34 149.4 106 64.2
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.0e-34 149.1 107 64.5
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.0e-34 149.1 111 63.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.6e-34 148.7 101 66.3
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.6e-34 148.7 108 64.8
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.4e-34 148.3 111 64.9
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 3.4e-34 148.3 112 62.5
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.5e-34 147.9 106 63.2
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 5.9e-34 147.5 107 64.5
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 7.6e-34 147.1 107 64.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.6e-34 147.1 107 64.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-33 146.4 107 64.5
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-33 146.4 107 64.5
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.2e-33 145.6 107 62.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.2e-33 145.6 107 62.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.2e-33 145.6 107 61.7
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.2e-33 145.6 107 62.6
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.2e-33 145.6 95 67.4
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 3.8e-33 144.8 107 62.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.8e-33 144.8 111 63.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 5.0e-33 144.4 95 70.5
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-33 144.1 96 68.8
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-32 143.3 106 60.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.9e-32 142.5 107 61.7
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-32 142.5 96 67.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 4.2e-32 141.4 93 66.7
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.8e-30 133.7 87 73.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.1e-29 133.3 93 64.5
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 7.4e-29 130.6 92 66.3
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 7.4e-29 130.6 91 65.9
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 7.4e-29 130.6 93 67.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.3e-28 129.8 92 63.0
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-28 129.8 91 67.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.2e-28 129.0 93 65.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 2.8e-28 128.6 110 54.5
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.8e-28 128.6 95 58.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.7e-28 128.3 103 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.4e-27 126.3 95 60.0
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 4.1e-27 124.8 81 67.9
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-26 122.9 106 57.5
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 5.0e-25 117.9 89 59.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.9e-24 115.9 99 58.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.8e-20 101.3 96 51.0
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.8e-19 99.4 75 62.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.1e-19 98.6 95 46.3
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-14 83.2 49 69.4
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.6e-13 79.0 93 44.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.2e-12 75.9 46 65.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 3.7e-12 75.1 46 65.2
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.1e-11 71.6 46 58.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 5.3e-11 71.2 46 63.0


User provided reference genes

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