Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 3.4e-138 495.0 248 100.0
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.7e-73 280.0 260 60.4
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.8e-54 216.9 245 46.5
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 9.9e-53 211.1 245 46.9
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.9e-51 206.8 245 45.3
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 6.0e-50 201.8 245 43.7
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.0e-50 201.8 245 44.1
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.3e-49 200.7 248 45.2
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 2.3e-49 199.9 245 44.5
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 3.0e-49 199.5 247 45.3
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 3.9e-49 199.1 240 46.2
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 3.9e-49 199.1 243 44.4
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 8.7e-49 198.0 246 44.7
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.1e-48 197.6 247 43.7
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.9e-48 196.8 247 44.5
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.9e-48 196.8 245 44.9
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 2.5e-48 196.4 246 45.5
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.5e-48 196.4 247 42.1
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 5.6e-48 195.3 247 41.7
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 7.3e-48 194.9 245 44.9
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.6e-47 193.7 241 42.3
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.6e-47 193.7 247 43.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.1e-47 193.4 249 43.0
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 2.1e-47 193.4 239 43.5
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 2.1e-47 193.4 241 42.3
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 6.2e-47 191.8 241 44.0
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 8.1e-47 191.4 245 44.1
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 8.1e-47 191.4 244 43.0
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.8e-46 190.3 248 45.6
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 1.8e-46 190.3 245 44.5
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 3.1e-46 189.5 241 44.0
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 6.9e-46 188.3 244 40.6
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 6.9e-46 188.3 244 42.2
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.5e-45 187.2 253 43.5
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.5e-45 187.2 249 43.0
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.0e-45 186.8 244 43.0
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 5.8e-45 185.3 243 43.2
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 5.8e-45 185.3 252 41.7
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 7.6e-45 184.9 244 42.2
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 7.6e-45 184.9 270 40.4
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 9.9e-45 184.5 253 43.1
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.3e-44 184.1 255 44.3
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 1.7e-44 183.7 236 42.4
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 3.8e-44 182.6 244 42.6
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 8.4e-44 181.4 244 40.2
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.4e-43 180.6 240 42.5
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.4e-43 180.6 249 42.2
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.4e-43 180.6 253 41.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.4e-43 180.6 292 38.0
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.9e-43 180.3 216 44.4
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.4e-43 179.9 248 41.5
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 3.2e-43 179.5 247 41.7
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 5.4e-43 178.7 247 40.9
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 5.4e-43 178.7 250 40.8
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 5.4e-43 178.7 217 43.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 5.4e-43 178.7 249 43.4
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 5.4e-43 178.7 282 38.3
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 7.1e-43 178.3 251 43.4
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 7.1e-43 178.3 249 41.8
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 7.1e-43 178.3 251 43.4
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 7.1e-43 178.3 251 43.4
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 7.1e-43 178.3 249 41.8
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 7.1e-43 178.3 248 41.5
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 2.1e-42 176.8 249 43.0
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.1e-42 176.8 219 43.4
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 2.7e-42 176.4 286 37.1
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 3.5e-42 176.0 249 41.4
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 4.6e-42 175.6 250 42.4
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.0e-42 175.3 234 40.6
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 6.0e-42 175.3 236 41.5
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 7.9e-42 174.9 252 41.3
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 1.0e-41 174.5 243 42.4
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 1.0e-41 174.5 243 42.4
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 1.3e-41 174.1 218 42.7
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 1.8e-41 173.7 248 43.5
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 2.3e-41 173.3 246 40.2
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.9e-41 172.6 240 41.7
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 8.7e-41 171.4 246 41.9
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.1e-40 171.0 240 42.5
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.5e-40 170.6 246 39.4
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.9e-40 170.2 221 43.0
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 1.9e-40 170.2 245 39.2
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.9e-40 170.2 247 38.1
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.5e-40 169.9 218 41.7
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 2.5e-40 169.9 252 41.3
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 4.3e-40 169.1 248 41.9
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 4.3e-40 169.1 259 39.4
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 7.4e-40 168.3 245 41.6
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 7.4e-40 168.3 245 41.6
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.3e-39 167.5 246 41.5
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 1.6e-39 167.2 218 41.3
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 2.1e-39 166.8 247 37.7
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 3.7e-39 166.0 219 43.4
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.7e-39 166.0 247 36.8
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 3.7e-39 166.0 250 36.8
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 6.2e-39 165.2 251 39.0
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 6.2e-39 165.2 241 39.8
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 8.1e-39 164.9 245 38.0
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 8.1e-39 164.9 249 39.0
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.1e-38 164.5 248 38.3
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.1e-38 164.5 220 40.9
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 2.4e-38 163.3 215 42.8
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 4.0e-38 162.5 248 39.9
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.3e-38 162.2 249 39.4
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 9.0e-38 161.4 247 39.7
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 1.2e-37 161.0 248 41.9
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.5e-37 160.6 264 38.6
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 2.6e-37 159.8 239 38.1
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 4.5e-37 159.1 247 39.3
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 5.8e-37 158.7 253 36.0
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 5.8e-37 158.7 221 42.5
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.3e-36 157.5 250 40.0
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 1.7e-36 157.1 250 34.8
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 2.2e-36 156.8 238 40.8
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.2e-36 156.8 229 42.4
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 2.9e-36 156.4 245 39.2
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 3.8e-36 156.0 247 39.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 3.8e-36 156.0 247 38.9
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 4.9e-36 155.6 251 38.2
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.1e-35 154.5 221 40.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.2e-35 152.5 247 34.8
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.1e-34 150.2 211 36.5
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.5e-34 149.4 241 36.9
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 4.6e-34 149.1 248 39.5
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.6e-31 140.6 259 35.1
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 4.8e-31 139.0 218 41.3
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 3.1e-30 136.3 219 37.9
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 3.1e-30 136.3 245 38.0
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.2e-29 134.4 241 37.3
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.3e-24 115.9 278 32.4
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 9.7e-24 114.8 182 36.3
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.3e-23 114.4 101 58.4
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 9.0e-22 108.2 247 34.0
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 9.0e-22 108.2 247 34.0
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.4e-21 106.3 283 30.7
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.4e-21 106.3 278 30.2
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.9e-21 105.5 318 28.3
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 7.7e-21 105.1 94 57.4
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 5.0e-20 102.4 135 45.2
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-19 101.3 314 29.0
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.5e-19 100.1 95 52.6
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 4.2e-19 99.4 94 51.1
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.2e-19 99.4 275 29.1
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 7.2e-19 98.6 250 32.4
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 4.1e-14 82.8 210 32.4
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.2e-13 81.3 110 40.0
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 8.5e-12 75.1 169 31.4
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 4.2e-11 72.8 131 31.3
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 9.4e-11 71.6 98 35.7
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 3.6e-10 69.7 74 47.3
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 9.7e-08 61.6 76 43.4
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.3e-07 61.2 84 38.1
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.8e-07 60.1 56 53.6
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 4.8e-07 59.3 83 42.2
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 8.2e-07 58.5 83 42.2
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 1.4e-06 57.8 83 39.8
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.4e-06 57.8 56 51.8
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.8e-06 57.4 46 56.5
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.8e-06 57.4 83 39.8
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.8e-06 57.4 83 39.8
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.4e-06 57.0 83 39.8
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 3.1e-06 56.6 71 45.1
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 7.0e-06 55.5 98 34.7
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 9.1e-06 55.1 82 39.0


User provided reference genes

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