Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.5e-91 338.2 209 100.0
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 5.6e-73 278.1 177 80.8
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.1e-63 245.7 172 72.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.4e-62 241.9 171 70.8
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.2e-61 239.6 171 70.2
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.2e-61 239.6 181 67.4
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.9e-61 239.2 171 70.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.9e-60 236.5 170 69.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.9e-60 236.5 168 72.6
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.4e-60 236.1 171 67.8
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.1e-60 235.3 173 68.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 5.4e-60 235.0 173 67.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.4e-60 235.0 172 68.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 5.4e-60 235.0 167 71.3
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.2e-59 233.8 171 68.4
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.6e-59 233.4 167 68.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.6e-59 233.4 172 66.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.1e-59 233.0 171 69.0
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.1e-59 233.0 171 69.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 4.6e-59 231.9 171 69.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.0e-59 231.5 171 69.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.0e-59 231.5 175 66.3
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.0e-58 230.7 171 69.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.0e-58 230.7 168 69.6
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.0e-58 230.7 171 70.8
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-58 230.3 170 67.1
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.7e-58 229.9 168 69.6
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.7e-58 229.9 171 69.0
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.3e-58 229.6 176 67.0
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.3e-58 229.6 172 66.9
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.0e-58 229.2 175 68.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.0e-58 229.2 171 67.3
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.9e-58 228.8 172 67.4
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 5.1e-58 228.4 170 69.4
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.1e-58 228.4 170 66.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.1e-58 228.4 172 68.0
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.6e-58 228.0 170 67.6
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 8.6e-58 227.6 170 68.2
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.9e-57 226.5 176 63.1
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 3.3e-57 225.7 171 66.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 5.6e-57 224.9 170 65.3
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 5.6e-57 224.9 171 68.4
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 7.3e-57 224.6 171 66.1
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.2e-56 223.8 172 66.3
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.6e-56 223.4 174 66.1
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.6e-56 223.4 170 66.5
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.6e-56 223.4 172 66.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.1e-56 223.0 170 65.9
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.1e-56 223.0 171 64.3
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.8e-56 222.6 170 65.9
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 2.8e-56 222.6 172 64.5
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.8e-56 222.6 172 65.7
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 4.7e-56 221.9 170 65.3
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.1e-55 220.7 171 64.3
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-55 220.7 181 65.2
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.1e-55 220.7 176 65.9
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.4e-55 220.3 177 64.4
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.8e-55 219.9 168 65.5
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.8e-55 219.9 172 67.4
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.8e-55 219.9 172 67.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.8e-55 219.9 171 64.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.8e-55 219.9 168 66.1
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.8e-55 219.9 168 65.5
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.3e-55 219.5 172 67.4
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.3e-55 219.5 172 67.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.1e-55 219.2 172 62.2
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.1e-55 219.2 172 62.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 4.0e-55 218.8 173 64.2
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 6.8e-55 218.0 180 63.3
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 6.8e-55 218.0 180 63.3
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.8e-55 218.0 171 63.7
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.8e-55 218.0 173 63.6
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.9e-55 217.6 161 67.7
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.9e-55 217.6 172 64.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 8.9e-55 217.6 168 64.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.2e-54 217.2 154 68.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.5e-54 216.9 171 62.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.6e-54 216.1 171 63.7
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.4e-54 215.7 168 66.1
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.8e-54 214.9 157 68.2
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 5.8e-54 214.9 171 65.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.5e-54 214.5 168 67.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 9.9e-54 214.2 157 70.1
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.7e-53 213.4 172 59.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.7e-53 213.4 171 64.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 2.2e-53 213.0 167 64.7
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 3.7e-53 212.2 153 69.3
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 3.7e-53 212.2 171 64.3
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 6.4e-53 211.5 168 62.5
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.1e-52 210.7 195 59.0
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.4e-52 210.3 172 64.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.4e-52 210.3 172 64.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.9e-52 209.9 175 65.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.4e-52 209.5 197 60.4
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.4e-52 209.5 150 68.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.2e-52 209.1 168 66.1
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.4e-52 208.4 172 64.0
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 7.1e-52 208.0 153 67.3
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.1e-52 208.0 179 61.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.6e-51 206.8 169 60.9
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 2.7e-51 206.1 172 63.4
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.5e-51 205.7 154 66.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.5e-51 205.7 154 66.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.0e-51 204.9 171 60.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.0e-50 204.1 172 62.8
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.9e-50 202.2 172 59.9
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 5.1e-50 201.8 167 63.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 8.6e-50 201.1 168 58.9
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.1e-49 200.7 170 60.6
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 4.3e-49 198.7 172 58.7
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.6e-49 198.4 209 53.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 9.5e-49 197.6 155 64.5
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 9.5e-49 197.6 155 64.5
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.1e-48 194.5 204 53.9
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.1e-48 194.5 193 56.5
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.8e-47 193.4 158 63.9
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.4e-47 193.0 171 60.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.1e-47 192.6 168 61.3
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 9.9e-46 187.6 175 57.1
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.9e-45 186.0 142 64.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.9e-45 185.3 171 56.1
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 6.4e-45 184.9 172 57.6
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.4e-45 184.5 164 59.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 5.1e-42 175.3 167 56.3
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.5e-41 173.7 166 56.0
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 9.6e-41 171.0 169 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.8e-40 168.7 171 52.6
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 9.3e-36 154.5 197 44.7
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.1e-35 153.3 135 57.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.5e-33 147.1 178 47.8
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.1e-31 139.4 130 56.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 5.3e-31 138.7 103 66.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.0e-30 136.7 174 46.6
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.7e-29 133.7 101 69.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.8e-29 132.5 177 42.9
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 7.1e-28 128.3 139 52.5
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-27 127.5 86 68.6
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.1e-27 126.7 84 67.9
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.3e-26 124.0 97 66.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 3.0e-26 122.9 89 65.2
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.0e-26 122.9 83 67.5
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 3.3e-25 119.4 87 64.4
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.7e-21 107.1 75 65.3
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 8.4e-21 104.8 75 64.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 6.7e-18 95.1 82 61.0
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.1e-16 90.1 81 59.3
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.9e-15 85.1 130 43.1
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.6e-14 83.2 68 61.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.0e-13 81.3 130 36.2
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.0e-10 71.2 65 66.2
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 6.7e-10 68.6 65 64.6
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 8.7e-10 68.2 62 58.1
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-09 67.0 99 43.4
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.3e-09 65.9 47 72.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.6e-08 63.9 76 47.4
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.3e-08 62.0 45 73.3


User provided reference genes

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