Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.5e-57 226.5 166 100.0
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 2.9e-24 115.9 71 69.0
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 6.5e-24 114.8 71 69.0
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 6.5e-24 114.8 73 65.8
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 1.1e-23 114.0 71 69.0
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 1.4e-23 113.6 72 69.4
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 1.4e-23 113.6 72 69.4
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 1.4e-23 113.6 72 69.4
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 1.4e-23 113.6 72 69.4
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 1.4e-23 113.6 72 69.4
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 1.4e-23 113.6 71 67.6
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.9e-23 113.2 71 69.0
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 1.9e-23 113.2 71 69.0
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 2.5e-23 112.8 72 65.3
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 3.2e-23 112.5 72 65.3
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 3.2e-23 112.5 71 67.6
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 4.2e-23 112.1 71 69.0
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 4.2e-23 112.1 71 67.6
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 4.2e-23 112.1 72 65.3
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 4.2e-23 112.1 72 65.3
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 5.5e-23 111.7 70 70.0
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 7.1e-23 111.3 72 68.1
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 7.1e-23 111.3 72 68.1
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 7.1e-23 111.3 71 66.2
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 7.1e-23 111.3 72 65.3
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 9.3e-23 110.9 72 66.7
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 9.3e-23 110.9 71 66.2
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 9.3e-23 110.9 71 67.6
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 9.3e-23 110.9 71 67.6
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 1.2e-22 110.5 72 63.9
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 1.2e-22 110.5 71 66.2
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 1.6e-22 110.2 71 66.2
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 1.6e-22 110.2 71 64.8
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 1.6e-22 110.2 72 68.1
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 2.1e-22 109.8 71 64.8
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 2.1e-22 109.8 71 64.8
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 2.7e-22 109.4 71 64.8
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 2.7e-22 109.4 71 64.8
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 2.7e-22 109.4 72 65.3
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 2.7e-22 109.4 71 64.8
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 2.7e-22 109.4 71 64.8
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 3.5e-22 109.0 70 68.6
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 4.6e-22 108.6 71 62.0
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 6.1e-22 108.2 70 68.6
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 6.1e-22 108.2 71 63.4
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 1.0e-21 107.5 71 64.8
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 1.0e-21 107.5 71 64.8
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.3e-21 107.1 69 66.7
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 1.8e-21 106.7 71 60.6
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 2.3e-21 106.3 71 63.4
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 3.9e-21 105.5 70 65.7
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 3.9e-21 105.5 71 62.0
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 3.9e-21 105.5 71 62.0
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 5.1e-21 105.1 71 63.4
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 8.7e-21 104.4 71 66.2
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 1.1e-20 104.0 71 62.0
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 1.1e-20 104.0 72 59.7
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 1.9e-20 103.2 71 60.6
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 1.9e-20 103.2 71 62.0
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 1.9e-20 103.2 71 60.6
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 2.5e-20 102.8 71 62.0
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 9.7e-20 100.9 71 57.7
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 1.3e-19 100.5 71 59.2
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 1.6e-19 100.1 71 60.6
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 2.2e-19 99.8 69 60.9
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 3.7e-19 99.0 69 58.0
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 4.8e-19 98.6 71 57.7
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 8.2e-19 97.8 71 56.3
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 1.4e-18 97.1 71 57.7
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 1.4e-18 97.1 71 57.7
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 1.8e-18 96.7 71 57.7
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 1.8e-18 96.7 71 57.7
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 1.8e-18 96.7 71 57.7
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 3.1e-18 95.9 71 56.3
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 5.3e-18 95.1 71 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 6.9e-18 94.7 70 58.6
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 2.6e-17 92.8 71 54.9
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 5.9e-17 91.7 72 51.4
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 7.7e-17 91.3 71 56.3
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 2.2e-16 89.7 71 57.7
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 2.2e-16 89.7 70 54.3
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 4.2e-15 85.5 71 53.5
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 9.4e-15 84.3 60 60.0
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 9.4e-15 84.3 69 53.6
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 2.7e-14 82.8 70 52.9
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 2.7e-14 82.8 70 52.9
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 2.3e-13 79.7 55 65.5
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 8.8e-13 77.8 47 70.2
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 1.1e-12 77.4 72 47.2
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 2.8e-11 72.8 48 64.6
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 4.8e-11 72.0 70 48.6
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 8.2e-11 71.2 46 67.4
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 1.8e-10 70.1 71 46.5
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 3.1e-10 69.3 49 63.3
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 6.9e-10 68.2 45 62.2
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 9.1e-10 67.8 45 62.2
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 9.1e-10 67.8 46 60.9
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 4.5e-09 65.5 46 56.5
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 4.5e-09 65.5 42 64.3
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 7.7e-09 64.7 45 60.0
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.3e-08 63.9 45 57.8
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 1.4e-07 60.5 43 60.5


User provided reference genes

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