Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0719500 Oryza sativa ssp. japonica HOM05D021585 ORTHO05D003264 5.0e-115 417.9 233 100.0
Os06g0720900 Oryza sativa ssp. japonica HOM05D021585 ORTHO05D003264 4.6e-84 315.1 168 100.0
Os06g0724000 Oryza sativa ssp. japonica HOM05D021585 ORTHO05D003264 4.6e-84 315.1 168 100.0
Zm00001eb272230 Zea mays HOM05D021585 ORTHO05D003264 9.3e-53 211.1 170 74.1
Os02g0833600 Oryza sativa ssp. japonica HOM05D021585 ORTHO05D003264 4.8e-17 92.4 151 47.0
Zm00001eb259650 Zea mays HOM05D021585 ORTHO05D003264 4.7e-12 75.9 149 43.0
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.5e-10 70.9 94 50.0
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 6.3e-09 65.5 81 51.9
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 6.3e-09 65.5 73 53.4
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 6.3e-09 65.5 73 53.4
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 6.3e-09 65.5 131 42.0
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 8.2e-09 65.1 80 51.2
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 8.2e-09 65.1 131 42.0
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 1.4e-08 64.3 77 54.5
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 1.4e-08 64.3 83 50.6
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.4e-08 64.3 73 54.8
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 1.8e-08 63.9 75 53.3
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.8e-08 63.9 73 54.8
Os01g0813100 Oryza sativa ssp. japonica HOM05D000531 ORTHO05D001630 3.1e-08 63.2 108 48.1
ClCG10G000520 Citrullus lanatus HOM05D003331 ORTHO05D003264 5.3e-08 62.4 83 48.2
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 5.3e-08 62.4 82 50.0
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 7.0e-08 62.0 82 50.0
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 7.0e-08 62.0 153 37.3
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 7.0e-08 62.0 81 49.4
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 7.0e-08 62.0 76 52.6
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 7.0e-08 62.0 81 44.4
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 9.1e-08 61.6 102 44.1
Solyc10g081350.2 Solanum lycopersicum HOM05D000531 ORTHO05D001630 9.1e-08 61.6 74 54.1
Sopen10g031850 Solanum pennellii HOM05D000531 ORTHO05D001630 9.1e-08 61.6 74 54.1
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 1.2e-07 61.2 93 47.3
Zm00001eb331880 Zea mays HOM05D000531 ORTHO05D003264 1.2e-07 61.2 129 42.6
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 2.0e-07 60.5 82 45.1
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 2.0e-07 60.5 81 49.4
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.7e-07 60.1 133 38.3
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.7e-07 60.1 80 50.0
MSTRG.22349 Avicennia marina HOM05D003331 ORTHO05D003264 3.5e-07 59.7 73 47.9
Dinv14548 Davidia involucrata HOM05D000531 ORTHO05D001630 3.5e-07 59.7 113 43.4
PSO339G0899 Papaver somniferum HOM05D000531 ORTHO05D001630 3.5e-07 59.7 93 48.4
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 3.5e-07 59.7 77 53.2
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.5e-07 59.3 95 45.3
PSO384G4223 Papaver somniferum HOM05D000531 ORTHO05D001630 4.5e-07 59.3 93 47.3
PGSC0003DMG400028121 Solanum tuberosum HOM05D000531 ORTHO05D001630 4.5e-07 59.3 70 54.3
Duzib168G1922 Durio zibethinus HOM05D000531 ORTHO05D001630 5.9e-07 58.9 75 53.3
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 5.9e-07 58.9 90 43.3
Sc02g0008740 Simmondsia chinensis HOM05D003331 ORTHO05D003264 5.9e-07 58.9 77 53.2
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 5.9e-07 58.9 81 48.1
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 5.9e-07 58.9 147 36.1
CAN.G128.130 Capsicum annuum HOM05D000531 ORTHO05D001630 7.7e-07 58.5 74 52.7
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 7.7e-07 58.5 119 37.0
Lalb_Chr21g0317361 Lupinus albus HOM05D000531 ORTHO05D001630 7.7e-07 58.5 73 49.3
Nitab4.5_0000811g0030 Nicotiana tabacum HOM05D000531 ORTHO05D001630 7.7e-07 58.5 74 52.7
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 7.7e-07 58.5 84 48.8
QL01p007456 Quercus lobata HOM05D000531 ORTHO05D001630 7.7e-07 58.5 73 53.4
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 7.7e-07 58.5 75 49.3
HPP92_012946 Vanilla planifolia HOM05D003331 ORTHO05D003264 7.7e-07 58.5 130 38.5
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.0e-06 58.2 81 48.1
Ca_04448_v3 Cicer arietinum L. HOM05D000531 ORTHO05D001630 1.0e-06 58.2 165 35.2
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.0e-06 58.2 81 46.9
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 1.0e-06 58.2 81 46.9
Duzib150G1531 Durio zibethinus HOM05D000531 ORTHO05D001630 1.0e-06 58.2 73 53.4
Glyma.06G022300 Glycine max HOM05D000531 ORTHO05D003264 1.0e-06 58.2 73 47.9
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.0e-06 58.2 81 46.9
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 1.0e-06 58.2 73 49.3
Os05g0489700 Oryza sativa ssp. japonica HOM05D000531 ORTHO05D001630 1.0e-06 58.2 74 55.4
CANSAT21G2102 Cannabis sativa HOM05D000531 ORTHO05D001630 1.3e-06 57.8 107 43.0
Cc00_g02380 Coffea canephora HOM05D000531 ORTHO05D001630 1.3e-06 57.8 109 43.1
Dinv37063 Davidia involucrata HOM05D000531 ORTHO05D001630 1.3e-06 57.8 130 40.8
Gohir.A05G285300 Gossypium hirsutum HOM05D000531 ORTHO05D001630 1.3e-06 57.8 74 54.1
Gorai.009G301400 Gossypium raimondii HOM05D000531 ORTHO05D001630 1.3e-06 57.8 74 54.1
unitig_21.g20150 Utricularia gibba HOM05D004720 ORTHO05D005359 1.3e-06 57.8 80 47.5
Actinidia17971 Actinidia chinensis HOM05D000531 ORTHO05D009735 1.7e-06 57.4 114 41.2
Actinidia37870 Actinidia chinensis HOM05D000531 ORTHO05D001630 1.7e-06 57.4 119 42.0
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.2e-06 57.0 111 42.3
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.2e-06 57.0 81 45.7
Lalb_Chr02g0157611 Lupinus albus HOM05D000531 ORTHO05D001630 2.2e-06 57.0 73 49.3
Lalb_Chr19g0132611 Lupinus albus HOM05D000531 ORTHO05D001630 2.2e-06 57.0 74 52.7
TWI77G0193 Tripterygium wilfordii HOM05D000531 ORTHO05D001630 2.2e-06 57.0 91 45.1
ClCG08G008570 Citrullus lanatus HOM05D000531 ORTHO05D001630 2.9e-06 56.6 74 52.7
CsaV3_6G004560 Cucumis sativus L. HOM05D000531 ORTHO05D001630 2.9e-06 56.6 74 52.7
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 2.9e-06 56.6 73 50.7
MD02G1266800 Malus domestica HOM05D000531 ORTHO05D001630 2.9e-06 56.6 110 41.8
Prupe.2G056800 Prunus persica HOM05D000531 ORTHO05D001630 2.9e-06 56.6 111 43.2
PGR142G1180 Punica granatum HOM05D000531 ORTHO05D001630 2.9e-06 56.6 174 31.6
RcHm_v2.0_Chr1g0330441 Rosa chinensis HOM05D000531 ORTHO05D001630 2.9e-06 56.6 111 43.2
Thecc.10G131000 Theobroma cacao HOM05D000531 ORTHO05D001630 2.9e-06 56.6 73 50.7
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.9e-06 56.6 79 46.8
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.8e-06 56.2 127 35.4
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 3.8e-06 56.2 127 35.4
Glyma.08G227000 Glycine max HOM05D000531 ORTHO05D001630 3.8e-06 56.2 108 43.5
Gohir.A05G285200 Gossypium hirsutum HOM05D000531 ORTHO05D001630 3.8e-06 56.2 74 52.7
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 3.8e-06 56.2 81 45.7
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 3.8e-06 56.2 79 48.1
Potri.010G248100 Populus trichocarpa HOM05D000531 ORTHO05D001630 3.8e-06 56.2 74 50.0
Hund05165 Selenicereus undatus HOM05D003331 ORTHO05D003264 3.8e-06 56.2 85 43.5
TAR633G1290 Trochodendron aralioides HOM05D000531 ORTHO05D001630 3.8e-06 56.2 129 41.9
Zm00001eb352240 Zea mays HOM05D000531 ORTHO05D001630 3.8e-06 56.2 74 52.7
AT3G56850 Arabidopsis thaliana HOM05D000531 ORTHO05D001630 5.0e-06 55.8 109 45.9
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.0e-06 55.8 118 38.1
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.0e-06 55.8 117 39.3
Manes.04G004300 Manihot esculenta HOM05D000531 ORTHO05D000877 5.0e-06 55.8 79 46.8
Manes.18G048100 Manihot esculenta HOM05D000531 ORTHO05D001630 5.0e-06 55.8 74 50.0
Peaxi162Scf00003g05367 Petunia axillaris HOM05D000531 ORTHO05D001630 5.0e-06 55.8 70 52.9
Potri.006G025800 Populus trichocarpa HOM05D000531 ORTHO05D001630 5.0e-06 55.8 108 42.6
CAN.G959.45 Capsicum annuum HOM05D000531 ORTHO05D001630 6.5e-06 55.5 70 52.9
Gohir.A13G230200 Gossypium hirsutum HOM05D000531 ORTHO05D001630 6.5e-06 55.5 73 50.7
Gohir.D13G235700 Gossypium hirsutum HOM05D000531 ORTHO05D001630 6.5e-06 55.5 73 50.7
Lsat_1_v5_gn_8_85300 Lactuca sativa HOM05D000531 ORTHO05D001630 6.5e-06 55.5 74 51.4
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 6.5e-06 55.5 124 37.9
Potri.010G248300 Populus trichocarpa HOM05D000531 ORTHO05D001630 6.5e-06 55.5 74 48.6
PGR004G2014 Punica granatum HOM05D000531 ORTHO05D000877 6.5e-06 55.5 101 41.6
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 6.5e-06 55.5 126 38.9
VMungo1080G0127 Vigna mungo HOM05D000531 ORTHO05D001630 6.5e-06 55.5 93 45.2
FvH4_7g04850 Fragaria vesca HOM05D000531 ORTHO05D001630 8.5e-06 55.1 111 43.2
Glyma.11G080000 Glycine max HOM05D003331 ORTHO05D003264 8.5e-06 55.1 73 46.6
HanXRQChr10g0291921 Helianthus annuus HOM05D000531 ORTHO05D001630 8.5e-06 55.1 74 50.0
Lj3g0019182 Lotus japonicus HOM05D000531 ORTHO05D001630 8.5e-06 55.1 74 51.4
Phvul.009G018700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 8.5e-06 55.1 75 49.3
TWI63G0520 Tripterygium wilfordii HOM05D000531 ORTHO05D001630 8.5e-06 55.1 73 47.9
Zm00001eb146690 Zea mays HOM05D003664 ORTHO05D003077 8.5e-06 55.1 138 37.7


User provided reference genes

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