Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 7.1e-84 313.9 162 100.0
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 3.7e-40 168.7 130 70.8
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 4.8e-40 168.3 95 89.5
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.4e-31 139.4 89 78.7
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 9.1e-31 137.5 86 80.2
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 9.1e-31 137.5 86 80.2
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 4.5e-30 135.2 86 79.1
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 7.7e-30 134.4 94 76.6
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 2.2e-29 132.9 89 75.3
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 2.9e-29 132.5 92 75.0
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 3.8e-29 132.1 97 73.2
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 6.5e-29 131.3 86 77.9
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 6.5e-29 131.3 95 71.6
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 8.5e-29 131.0 87 78.2
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 8.5e-29 131.0 81 80.2
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.1e-28 130.6 80 80.0
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 1.5e-28 130.2 94 73.4
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 2.5e-28 129.4 97 72.2
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 2.5e-28 129.4 88 76.1
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 3.2e-28 129.0 97 72.2
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 3.2e-28 129.0 86 74.4
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 3.2e-28 129.0 97 72.2
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 4.2e-28 128.6 77 81.8
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 5.5e-28 128.3 93 72.0
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 5.5e-28 128.3 83 77.1
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.5e-28 128.3 83 78.3
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 5.5e-28 128.3 80 78.8
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 5.5e-28 128.3 80 78.8
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 5.5e-28 128.3 86 72.1
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 7.2e-28 127.9 97 71.1
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 9.4e-28 127.5 102 67.6
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 9.4e-28 127.5 102 67.6
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 9.4e-28 127.5 93 72.0
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 9.4e-28 127.5 93 72.0
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 9.4e-28 127.5 74 83.8
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 9.4e-28 127.5 93 71.0
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 1.2e-27 127.1 93 73.1
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.2e-27 127.1 80 77.5
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 1.2e-27 127.1 74 83.8
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.2e-27 127.1 80 77.5
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 1.6e-27 126.7 94 71.3
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 1.6e-27 126.7 95 71.6
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 2.1e-27 126.3 97 71.1
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 2.1e-27 126.3 95 71.6
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 2.1e-27 126.3 93 68.8
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 2.1e-27 126.3 93 69.9
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 2.1e-27 126.3 95 71.6
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 2.7e-27 125.9 95 69.5
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 2.7e-27 125.9 101 67.3
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 3.6e-27 125.6 75 81.3
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 4.7e-27 125.2 93 69.9
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 4.7e-27 125.2 98 70.4
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 6.1e-27 124.8 75 80.0
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 6.1e-27 124.8 97 70.1
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 8.0e-27 124.4 87 74.7
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 8.0e-27 124.4 92 71.7
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 8.0e-27 124.4 94 68.1
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.0e-26 124.0 95 69.5
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 1.0e-26 124.0 91 70.3
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.4e-26 123.6 75 80.0
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.4e-26 123.6 97 70.1
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.4e-26 123.6 93 68.8
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 1.8e-26 123.2 95 69.5
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.8e-26 123.2 90 71.1
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.3e-26 122.9 83 74.7
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 3.0e-26 122.5 85 71.8
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 4.0e-26 122.1 97 69.1
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 4.0e-26 122.1 94 67.0
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 5.2e-26 121.7 75 81.3
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 5.2e-26 121.7 75 78.7
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 5.2e-26 121.7 93 69.9
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 6.7e-26 121.3 80 73.8
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 8.8e-26 120.9 97 66.0
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 1.1e-25 120.6 83 73.5
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 2.6e-25 119.4 95 66.3
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 3.3e-25 119.0 75 74.7
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.3e-25 119.0 96 65.6
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 3.3e-25 119.0 96 65.6
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 3.3e-25 119.0 75 73.3
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 4.4e-25 118.6 96 66.7
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 5.7e-25 118.2 75 73.3
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 7.5e-25 117.9 93 69.9
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 7.5e-25 117.9 93 69.9
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 7.5e-25 117.9 83 72.3
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 7.5e-25 117.9 83 72.3
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 1.7e-24 116.7 98 65.3
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 1.7e-24 116.7 98 65.3
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 2.2e-24 116.3 96 64.6
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 2.2e-24 116.3 96 64.6
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 2.2e-24 116.3 96 64.6
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 2.2e-24 116.3 96 64.6
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 2.2e-24 116.3 96 64.6
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 2.2e-24 116.3 96 64.6
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 8.2e-24 114.4 92 68.5
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 8.2e-24 114.4 82 72.0
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.1e-23 114.0 92 68.5
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.1e-23 114.0 92 68.5
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 1.2e-22 110.5 84 66.7
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.1e-20 104.0 92 66.3
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 2.0e-17 93.2 86 64.0
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 9.1e-15 84.3 51 74.5
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 2.1e-11 73.2 115 41.7
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 8.0e-11 71.2 59 66.1
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 7.7e-06 54.7 70 38.6


User provided reference genes

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