Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 2.8e-58 228.4 114 100.0
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 2.6e-40 168.7 114 75.4
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 4.9e-31 137.9 103 67.0
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 2.4e-30 135.6 120 63.3
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 2.1e-29 132.5 106 63.2
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 7.8e-29 130.6 116 60.3
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 1.7e-28 129.4 118 61.9
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 1.7e-28 129.4 118 61.9
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 1.7e-28 129.4 114 63.2
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 2.3e-28 129.0 111 62.2
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 3.0e-28 128.6 114 61.4
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 3.9e-28 128.3 103 60.2
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 3.9e-28 128.3 106 63.2
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 5.1e-28 127.9 113 61.1
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 5.1e-28 127.9 113 61.1
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 5.1e-28 127.9 113 61.1
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 5.1e-28 127.9 111 61.3
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 5.1e-28 127.9 106 63.2
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 5.1e-28 127.9 127 60.6
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 6.6e-28 127.5 101 63.4
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 8.6e-28 127.1 113 61.1
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 8.6e-28 127.1 118 61.0
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 8.6e-28 127.1 119 59.7
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 8.6e-28 127.1 121 57.9
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 8.6e-28 127.1 94 68.1
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 1.1e-27 126.7 127 59.1
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 1.1e-27 126.7 94 67.0
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 1.5e-27 126.3 97 68.0
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 1.9e-27 125.9 111 60.4
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 1.9e-27 125.9 111 60.4
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 1.9e-27 125.9 112 61.6
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 2.5e-27 125.6 127 59.1
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 3.3e-27 125.2 97 64.9
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 3.3e-27 125.2 117 61.5
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 3.3e-27 125.2 120 57.5
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 4.3e-27 124.8 119 54.6
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 5.6e-27 124.4 119 53.8
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 7.3e-27 124.0 119 58.0
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 1.2e-26 123.2 104 60.6
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 1.2e-26 123.2 94 63.8
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 1.6e-26 122.9 118 54.2
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 1.6e-26 122.9 115 54.8
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.6e-26 122.9 115 54.8
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 2.1e-26 122.5 101 62.4
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 2.1e-26 122.5 98 62.2
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 2.1e-26 122.5 120 58.3
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 2.1e-26 122.5 97 61.9
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 2.1e-26 122.5 92 65.2
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 2.8e-26 122.1 118 56.8
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 2.8e-26 122.1 92 65.2
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 2.8e-26 122.1 113 55.8
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 2.8e-26 122.1 123 55.3
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 3.6e-26 121.7 101 60.4
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 3.6e-26 121.7 123 55.3
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 3.6e-26 121.7 100 63.0
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 8.1e-26 120.6 122 56.6
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 1.4e-25 119.8 94 63.8
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 1.4e-25 119.8 114 59.6
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 2.4e-25 119.0 118 55.9
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 4.0e-25 118.2 118 55.9
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 4.0e-25 118.2 118 55.1
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 6.9e-25 117.5 120 55.8
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 6.9e-25 117.5 118 55.1
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 8.9e-25 117.1 129 53.5
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 8.9e-25 117.1 111 56.8
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 8.9e-25 117.1 114 57.0
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 1.2e-24 116.7 121 52.1
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 3.4e-24 115.2 97 58.8
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 7.6e-24 114.0 124 54.0
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 1.7e-23 112.8 108 54.6
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 2.2e-23 112.5 103 57.3
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 3.8e-23 111.7 117 54.7
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 4.9e-23 111.3 107 50.5
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 6.4e-23 110.9 103 56.3
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 2.4e-22 109.0 102 54.9
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 3.2e-22 108.6 118 52.5
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 7.8e-21 104.0 117 51.3
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 9.0e-17 90.5 116 47.4
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 4.5e-16 88.2 77 57.1
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 7.6e-16 87.4 75 62.7
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 9.9e-16 87.0 83 56.6
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 9.9e-16 87.0 110 41.8
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.2e-15 85.9 115 44.3
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.2e-15 85.9 115 44.3
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 2.9e-15 85.5 106 44.3
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 2.9e-15 85.5 123 48.0
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 3.8e-15 85.1 61 63.9
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 4.9e-15 84.7 98 53.1
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 6.4e-15 84.3 77 54.5
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 1.1e-14 83.6 103 51.5
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 1.4e-14 83.2 93 51.6
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 1.8e-12 76.3 114 42.1
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 5.1e-12 74.7 106 46.2
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 1.1e-11 73.6 112 43.8
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 1.9e-11 72.8 62 62.9
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 7.4e-11 70.9 121 37.2
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 7.4e-11 70.9 76 52.6
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 1.6e-10 69.7 64 59.4
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 4.8e-10 68.2 89 48.3
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 1.4e-09 66.6 59 62.7
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 4.0e-09 65.1 87 51.7
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 1.5e-08 63.2 67 56.7
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 2.0e-08 62.8 99 44.4
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 4.5e-08 61.6 83 45.8
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 5.8e-08 61.2 94 45.7
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 1.7e-07 59.7 113 35.4


User provided reference genes

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