Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.6e-106 388.3 198 100.0
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.9e-78 296.2 200 77.5
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.4e-78 294.7 203 77.3
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 9.3e-70 267.3 189 67.2
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.3e-66 256.9 190 66.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 6.2e-66 254.6 196 63.3
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 6.2e-66 254.6 189 67.7
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.8e-65 253.1 190 65.8
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 3.1e-65 252.3 197 64.5
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 9.0e-65 250.8 200 62.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 9.0e-65 250.8 198 63.6
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.2e-64 250.4 199 63.3
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.2e-64 250.4 196 63.3
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.0e-64 249.6 200 62.5
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.6e-64 249.2 201 62.2
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 2.6e-64 249.2 195 62.6
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.6e-64 249.2 197 62.9
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 3.4e-64 248.8 189 64.6
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 1.3e-63 246.9 198 63.1
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.3e-63 246.9 199 62.8
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 2.2e-63 246.1 192 62.5
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.2e-63 246.1 193 64.2
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.2e-63 246.1 185 67.0
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 2.9e-63 245.7 199 61.8
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 3.8e-63 245.4 197 60.9
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 4.9e-63 245.0 202 60.4
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 8.4e-63 244.2 191 63.4
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 8.4e-63 244.2 198 62.6
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 8.4e-63 244.2 197 61.9
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.4e-62 243.4 197 61.4
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.4e-62 243.4 187 64.2
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.9e-62 243.0 188 63.8
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 2.5e-62 242.7 192 63.5
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.2e-62 242.3 190 63.2
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 4.2e-62 241.9 185 64.9
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.1e-62 241.1 197 60.9
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.3e-62 240.7 197 60.4
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.2e-61 240.4 196 59.7
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.2e-61 240.4 190 63.7
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.6e-61 240.0 197 62.9
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 2.7e-61 239.2 188 60.1
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 2.7e-61 239.2 198 60.1
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 3.5e-61 238.8 189 61.4
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 7.9e-61 237.7 200 61.0
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.0e-60 237.3 189 61.4
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.0e-60 237.3 189 63.5
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.3e-60 236.9 189 60.8
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.3e-60 236.9 200 61.0
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.8e-60 236.5 186 62.9
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 3.0e-60 235.7 198 60.6
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 3.0e-60 235.7 190 61.6
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 3.9e-60 235.3 197 61.9
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 5.1e-60 235.0 189 61.9
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 5.1e-60 235.0 189 61.9
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 5.1e-60 235.0 186 62.9
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 8.7e-60 234.2 191 60.7
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.1e-59 233.8 197 58.9
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.1e-59 233.8 196 58.7
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.5e-59 232.6 189 61.9
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 3.3e-59 232.3 199 61.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 4.3e-59 231.9 189 61.9
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 4.3e-59 231.9 189 61.4
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 4.3e-59 231.9 189 61.9
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 4.3e-59 231.9 194 60.3
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 5.7e-59 231.5 185 62.2
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 7.4e-59 231.1 209 60.3
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 7.4e-59 231.1 187 58.8
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 1.6e-58 229.9 189 61.4
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 2.1e-58 229.6 193 60.1
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.8e-58 229.2 220 54.5
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 3.7e-58 228.8 198 59.6
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.8e-58 228.4 198 58.6
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 4.8e-58 228.4 207 56.0
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 6.9e-57 224.6 194 55.7
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 9.0e-57 224.2 201 58.2
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 9.0e-57 224.2 200 58.5
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 1.2e-56 223.8 190 58.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.5e-56 223.4 190 58.4
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 5.9e-56 221.5 187 61.5
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.3e-55 220.3 189 57.1
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 8.4e-55 217.6 204 58.3
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 8.4e-55 217.6 247 49.4
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 5.5e-54 214.9 202 54.0
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 1.6e-53 213.4 284 45.8
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 2.1e-53 213.0 244 48.4
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 5.1e-52 208.4 158 65.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 8.7e-52 207.6 196 54.1
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.6e-50 203.4 188 53.7
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.1e-49 200.7 153 63.4
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 5.9e-48 194.9 142 63.4
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.9e-47 192.6 189 54.0
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 8.5e-47 191.0 155 63.2
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.1e-46 190.7 184 53.3
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 1.9e-46 189.9 220 47.7
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 2.5e-46 189.5 193 50.8
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.2e-45 187.2 305 39.7
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.6e-45 186.8 193 52.3
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 6.1e-45 184.9 342 37.1
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 2.0e-43 179.9 187 50.3
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.5e-43 179.5 117 72.6
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 9.7e-43 177.6 146 60.3
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 6.3e-42 174.9 195 49.2
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.1e-41 172.6 199 48.7
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 4.1e-41 172.2 141 58.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.5e-40 170.2 149 57.7
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.5e-40 170.2 148 58.8
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.5e-40 168.7 200 48.0
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 6.5e-39 164.9 193 47.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.9e-36 155.6 123 64.2
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 1.2e-32 144.1 108 66.7
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.6e-32 143.7 103 65.0
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 9.4e-30 134.4 190 41.6
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.1e-27 127.5 193 40.4
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.6e-27 126.3 121 56.2
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 5.3e-25 118.6 88 63.6
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 1.7e-23 113.6 241 33.2
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.5e-23 111.3 133 50.4
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.5e-22 110.5 91 60.4
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 5.7e-19 98.6 78 64.1
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.7e-18 97.1 75 61.3
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.7e-18 95.9 147 35.4
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.7e-16 88.2 88 54.5
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.0e-15 87.8 188 33.0
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 4.7e-13 79.0 210 33.3
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-12 77.0 89 42.7
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.8e-12 75.1 89 42.7
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 8.8e-12 74.7 90 42.2
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-11 74.3 89 43.8
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.5e-11 73.9 67 56.7
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 2.2e-10 70.1 57 61.4
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 5.4e-09 65.5 107 34.6
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.2e-08 64.3 51 62.7
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 1.2e-08 64.3 51 62.7
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 4.5e-08 62.4 60 53.3
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 7.7e-08 61.6 54 53.7
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.6e-07 58.5 86 41.9
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.5e-06 57.4 52 50.0
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 1.9e-06 57.0 166 31.3


User provided reference genes

Program Settings