Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.0e-199 699.9 366 100.0
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 9.0e-111 404.4 325 67.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 8.8e-58 228.4 362 39.5
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.1e-55 221.5 367 38.1
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 4.1e-55 219.5 384 35.9
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 6.6e-53 212.2 367 36.8
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 9.5e-52 208.4 368 36.1
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 2.1e-51 207.2 376 37.0
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 6.1e-51 205.7 368 35.3
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 6.1e-51 205.7 364 36.8
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.4e-50 204.5 357 37.5
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.8e-50 204.1 355 36.6
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.3e-50 203.8 363 35.3
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 2.3e-50 203.8 369 34.4
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 5.2e-50 202.6 370 36.5
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 6.8e-50 202.2 364 36.0
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 8.9e-50 201.8 369 35.2
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.2e-49 201.4 364 36.0
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 3.4e-49 199.9 369 37.1
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 8.3e-48 195.3 360 35.6
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.1e-47 194.9 364 36.5
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.8e-47 194.1 359 35.7
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.8e-47 194.1 364 36.0
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 3.2e-47 193.4 369 34.1
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 9.2e-47 191.8 363 36.4
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 9.2e-47 191.8 363 34.2
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 9.2e-47 191.8 355 33.5
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.0e-45 188.3 377 35.5
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.0e-45 186.8 368 34.2
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 5.0e-45 186.0 362 36.2
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.0e-45 186.0 354 34.7
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 5.0e-45 186.0 418 35.9
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 6.6e-45 185.7 361 36.6
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.1e-44 184.9 353 36.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.5e-44 184.5 359 35.1
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 2.5e-44 183.7 369 32.8
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.5e-44 183.7 358 35.5
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 5.6e-44 182.6 368 33.4
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 5.6e-44 182.6 368 34.8
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 7.3e-44 182.2 364 36.0
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 7.3e-44 182.2 368 34.8
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 9.5e-44 181.8 374 34.0
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 9.5e-44 181.8 372 33.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-43 181.4 369 33.6
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.0e-42 178.3 357 35.3
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 3.1e-42 176.8 385 34.5
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 4.0e-42 176.4 359 34.8
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.2e-41 174.9 372 30.9
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.5e-41 174.5 383 32.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.0e-41 174.1 363 33.9
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 2.6e-41 173.7 354 32.5
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 3.4e-41 173.3 366 33.1
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 1.3e-40 171.4 362 33.1
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.3e-40 171.4 357 33.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.7e-40 171.0 340 35.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 3.7e-40 169.9 369 33.1
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 1.1e-39 168.3 358 33.8
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 5.4e-39 166.0 361 32.7
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 7.0e-39 165.6 357 31.4
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 2.7e-38 163.7 353 32.6
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 6.0e-38 162.5 356 34.3
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 7.8e-38 162.2 364 32.7
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-37 161.8 355 34.6
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.0e-37 161.8 327 35.5
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.7e-37 161.0 323 35.0
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 2.3e-37 160.6 356 33.1
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 2.3e-37 160.6 354 33.3
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 2.3e-37 160.6 360 32.8
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 3.0e-37 160.2 354 33.1
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 3.0e-37 160.2 361 33.0
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 3.0e-37 160.2 370 32.7
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 3.9e-37 159.8 357 33.6
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.1e-36 158.3 351 32.2
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.5e-36 157.9 351 31.9
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.5e-36 157.9 364 32.4
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 4.3e-36 156.4 352 32.4
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 5.6e-36 156.0 353 32.0
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.6e-35 154.5 348 31.3
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.8e-35 153.7 321 32.1
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 3.6e-35 153.3 473 29.4
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 4.7e-35 152.9 356 32.3
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 6.2e-35 152.5 325 32.3
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 8.1e-35 152.1 357 31.9
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.1e-34 151.8 358 32.4
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 1.4e-34 151.4 362 32.0
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 4.0e-34 149.8 352 31.2
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 5.2e-34 149.4 350 30.9
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.5e-33 147.9 301 33.6
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 2.0e-33 147.5 354 32.5
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.0e-33 147.5 355 31.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 2.6e-33 147.1 340 32.6
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.3e-32 144.8 345 31.9
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.7e-32 144.4 354 31.4
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 3.7e-32 143.3 357 31.4
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 4.9e-32 142.9 352 31.8
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 1.1e-31 141.7 186 41.9
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-31 141.4 289 35.3
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.9e-31 141.0 358 30.4
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.6e-30 137.9 355 29.6
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 4.6e-30 136.3 343 29.2
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.3e-29 134.8 365 30.7
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 7.3e-28 129.0 296 33.4
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 2.1e-27 127.5 327 29.7
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 4.0e-26 123.2 292 29.1
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 8.9e-26 122.1 198 36.4
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.2e-25 121.7 205 39.5
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 2.2e-24 117.5 369 26.0
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.9e-24 116.3 231 37.2
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 4.9e-24 116.3 400 27.8
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-23 115.2 278 29.5
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 6.0e-22 109.4 274 31.0
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 1.7e-21 107.8 221 34.4
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.5e-20 104.8 353 26.6
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 3.3e-20 103.6 219 34.7
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 7.3e-20 102.4 280 29.6
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 4.7e-19 99.8 258 32.9
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-18 97.4 273 31.5
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-18 97.4 273 31.5
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-18 97.4 273 31.5
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-17 93.6 234 31.6
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 4.9e-16 89.7 410 24.9
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 4.2e-15 86.7 252 31.0
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 7.8e-14 82.4 223 29.6
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.3e-13 80.9 386 26.4
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 5.1e-13 79.7 121 38.0
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 2.4e-10 70.9 90 40.0
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-09 68.6 125 33.6
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 2.0e-09 67.8 130 33.8
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.9e-07 61.2 94 34.0
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.9e-07 61.2 178 29.8
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 1.6e-06 58.2 213 26.8


User provided reference genes

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