Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 1.4e-60 236.1 117 100.0
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 2.8e-34 148.7 116 63.8
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 6.3e-34 147.5 107 71.0
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 1.6e-32 142.9 100 73.0
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 1.0e-31 140.2 99 66.7
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 1.0e-31 140.2 104 67.3
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 2.3e-31 139.0 93 72.0
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 3.8e-31 138.3 121 53.7
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 5.0e-31 137.9 100 68.0
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 8.6e-31 137.1 117 60.7
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 1.5e-30 136.3 103 64.1
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 1.5e-30 136.3 103 64.1
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 1.5e-30 136.3 103 64.1
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 1.5e-30 136.3 100 67.0
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 1.9e-30 136.0 93 71.0
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 2.5e-30 135.6 105 63.8
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 3.3e-30 135.2 95 67.4
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 3.3e-30 135.2 108 60.2
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 3.3e-30 135.2 99 66.7
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 3.3e-30 135.2 101 65.3
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 7.3e-30 134.0 105 61.0
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 7.3e-30 134.0 105 61.0
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 7.3e-30 134.0 105 62.9
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 7.3e-30 134.0 100 65.0
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 7.3e-30 134.0 107 62.6
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 1.2e-29 133.3 111 61.3
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 1.2e-29 133.3 93 71.0
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 1.2e-29 133.3 108 63.0
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 1.6e-29 132.9 108 63.0
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 1.6e-29 132.9 105 61.9
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 1.6e-29 132.9 105 61.0
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 1.6e-29 132.9 105 61.0
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 1.6e-29 132.9 109 58.7
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 1.6e-29 132.9 93 67.7
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 1.6e-29 132.9 98 68.4
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 1.6e-29 132.9 95 68.4
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 2.1e-29 132.5 97 67.0
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 2.8e-29 132.1 105 61.0
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 2.8e-29 132.1 105 61.9
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 2.8e-29 132.1 105 61.9
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 2.8e-29 132.1 105 61.9
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 2.8e-29 132.1 113 59.3
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 2.8e-29 132.1 114 57.9
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 2.8e-29 132.1 114 57.9
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 3.6e-29 131.7 97 64.9
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 4.7e-29 131.3 105 61.9
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 4.7e-29 131.3 95 66.3
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 6.1e-29 131.0 105 60.0
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 6.1e-29 131.0 105 61.0
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 6.1e-29 131.0 99 63.6
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 8.0e-29 130.6 97 64.9
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 8.0e-29 130.6 106 61.3
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 8.0e-29 130.6 95 66.3
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 1.0e-28 130.2 93 66.7
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 1.0e-28 130.2 96 65.6
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 1.4e-28 129.8 93 65.6
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 1.4e-28 129.8 96 64.6
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 1.4e-28 129.8 97 63.9
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 1.4e-28 129.8 98 66.3
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 1.4e-28 129.8 108 59.3
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 1.8e-28 129.4 104 63.5
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 2.3e-28 129.0 108 61.1
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 2.3e-28 129.0 102 62.7
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 2.3e-28 129.0 93 65.6
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 2.3e-28 129.0 116 54.3
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 2.3e-28 129.0 93 65.6
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 4.0e-28 128.3 97 62.9
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 4.0e-28 128.3 116 54.3
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 4.0e-28 128.3 97 62.9
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 5.2e-28 127.9 111 57.7
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 5.2e-28 127.9 100 62.0
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 5.2e-28 127.9 109 61.5
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 6.8e-28 127.5 107 62.6
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 6.8e-28 127.5 105 62.9
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 8.9e-28 127.1 97 63.9
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 8.9e-28 127.1 97 61.9
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 1.2e-27 126.7 93 65.6
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 1.5e-27 126.3 93 64.5
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 1.5e-27 126.3 100 63.0
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 5.8e-27 124.4 93 65.6
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 7.5e-27 124.0 98 60.2
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 9.8e-27 123.6 82 73.2
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 1.3e-26 123.2 97 57.7
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 2.2e-26 122.5 96 61.5
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 2.9e-26 122.1 100 58.0
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 2.9e-26 122.1 97 60.8
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 8.3e-26 120.6 96 62.5
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 8.3e-26 120.6 82 72.0
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 2.4e-25 119.0 96 59.4
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 3.2e-25 118.6 84 69.0
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 4.1e-25 118.2 82 72.0
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 5.4e-25 117.9 99 58.6
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 7.0e-25 117.5 91 60.4
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 7.0e-25 117.5 82 72.0
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 1.2e-24 116.7 82 72.0
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 3.5e-24 115.2 83 63.9
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 7.8e-24 114.0 116 52.6
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 2.3e-23 112.5 101 52.5
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 3.3e-22 108.6 103 52.4
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 5.6e-22 107.8 97 54.6
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 8.0e-21 104.0 99 56.6
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 6.8e-20 100.9 97 51.5
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 4.4e-19 98.2 94 50.0
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 4.6e-16 88.2 82 48.8
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 6.0e-16 87.8 129 40.3
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 2.6e-11 72.4 61 62.3
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 7.1e-09 64.3 112 35.7
MCO15G665 Micromonas commoda HOM05D007268 ORTHO05D009152 5.6e-06 54.7 62 43.5


User provided reference genes

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