Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0670100 Oryza sativa ssp. japonica HOM05D003251 ORTHO05D003770 2.2e-238 828.6 414 100.0
Zm00001eb274250 Zea mays HOM05D003251 ORTHO05D003770 1.1e-80 304.7 439 47.4
Os02g0168300 Oryza sativa ssp. japonica HOM05D003251 ORTHO05D003770 1.3e-41 174.9 438 35.2
Zm00001eb207380 Zea mays HOM05D003251 ORTHO05D003770 2.6e-37 160.6 427 32.6
TAR626G1483 Trochodendron aralioides HOM05D003251 ORTHO05D003770 1.5e-24 118.2 467 27.8
Nn7g38011 Nelumbo nucifera HOM05D003251 ORTHO05D003770 9.5e-24 115.5 492 27.2
Prupe.3G178400 Prunus persica HOM05D003251 ORTHO05D003770 3.0e-22 110.5 485 27.0
PSO675G1700 Papaver somniferum HOM05D003251 ORTHO05D003770 6.8e-22 109.4 446 28.5
A10p05260 Brassica napus HOM05D003251 ORTHO05D003770 1.7e-20 104.8 392 30.1
LjContig00049g0008406 Lotus japonicus HOM05D003251 ORTHO05D003770 2.8e-20 104.0 467 28.7
Duzib138G1023 Durio zibethinus HOM05D003251 ORTHO05D003770 3.7e-20 103.6 477 27.9
Lsat_1_v5_gn_3_35120 Lactuca sativa HOM05D003251 ORTHO05D003770 3.7e-20 103.6 356 29.2
Hma1.2p1_0734F.1_g210390 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 6.3e-20 102.8 399 26.6
PGSC0003DMG400028816 Solanum tuberosum HOM05D003251 ORTHO05D003770 1.1e-19 102.1 392 27.6
BraA10t42791Z Brassica rapa HOM05D003251 ORTHO05D003770 1.8e-19 101.3 394 29.7
MD09G1146900 Malus domestica HOM05D003251 ORTHO05D003770 1.8e-19 101.3 488 26.6
Thecc.01G167800 Theobroma cacao HOM05D003251 ORTHO05D003770 1.8e-19 101.3 466 27.3
GSVIVG01020830001 Vitis vinifera HOM05D003251 ORTHO05D003770 1.8e-19 101.3 228 35.5
Sopen12g002220 Solanum pennellii HOM05D003251 ORTHO05D003770 2.4e-19 100.9 391 27.6
CsaV3_4G007570 Cucumis sativus L. HOM05D003251 ORTHO05D003770 3.1e-19 100.5 411 27.0
COL.COLO4_04817 Corchorus olitorius HOM05D003251 ORTHO05D003770 5.4e-19 99.8 481 27.0
Manes.01G131000 Manihot esculenta HOM05D003251 ORTHO05D003770 5.4e-19 99.8 479 27.3
DCAR_013326 Daucus carota HOM05D003251 ORTHO05D003770 7.0e-19 99.4 438 29.5
Sopen07g023570 Solanum pennellii HOM05D003251 ORTHO05D003770 7.0e-19 99.4 230 34.8
BolC5t29257H Brassica oleracea HOM05D003251 ORTHO05D003770 9.2e-19 99.0 392 28.6
Manes.02G089300 Manihot esculenta HOM05D003251 ORTHO05D003770 9.2e-19 99.0 483 27.7
TWI14G0046 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 9.2e-19 99.0 439 26.2
MBI01_g06560_MAGBIO Magnolia biondii HOM05D003251 ORTHO05D003770 1.2e-18 98.6 453 26.9
Solyc07g045010.3 Solanum lycopersicum HOM05D003251 ORTHO05D003770 1.2e-18 98.6 227 34.8
MELO3C016184.2 Cucumis melo HOM05D003251 ORTHO05D003770 2.7e-18 97.4 429 28.0
TWI59G1422 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 2.7e-18 97.4 472 25.6
MD17G1133500 Malus domestica HOM05D003251 ORTHO05D003770 3.5e-18 97.1 469 26.4
CSS0030132 Camellia sinensis var. sinensis HOM05D003251 ORTHO05D003770 4.5e-18 96.7 455 25.9
Lalb_Chr04g0248951 Lupinus albus HOM05D003251 ORTHO05D003770 4.5e-18 96.7 435 28.0
C05p04850 Brassica napus HOM05D003251 ORTHO05D003770 7.8e-18 95.9 395 28.6
Rhsim05G0166800 Rhododendron simsii HOM05D003251 ORTHO05D003770 7.8e-18 95.9 428 25.9
vmacro19571 Vaccinium macrocarpon HOM05D003251 ORTHO05D003770 1.0e-17 95.5 427 26.5
AUR62017590 Chenopodium quinoa HOM05D003251 ORTHO05D003770 1.3e-17 95.1 387 27.6
Ciclev10031282m.g Citrus clementina HOM05D003251 ORTHO05D003770 1.3e-17 95.1 500 26.8
CAN.G1500.6 Capsicum annuum HOM05D003251 ORTHO05D003770 1.7e-17 94.7 214 33.6
Potri.002G057000 Populus trichocarpa HOM05D003251 ORTHO05D003770 2.9e-17 94.0 442 28.5
TPR.G26007 Trifolium pratense HOM05D003251 ORTHO05D003770 2.9e-17 94.0 434 27.0
Aqoxy1G01562 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 3.8e-17 93.6 445 27.2
ClCG07G010750 Citrullus lanatus HOM05D003251 ORTHO05D003770 3.8e-17 93.6 480 26.7
Nitab4.5_0001552g0070 Nicotiana tabacum HOM05D003251 ORTHO05D003770 3.8e-17 93.6 394 28.2
SGA_v2.0_scaffold49G18391 Striga asiatica HOM05D003251 ORTHO05D003770 3.8e-17 93.6 472 28.0
Haze_13578 Corylus avellana HOM05D003251 ORTHO05D003770 6.6e-17 92.8 476 27.3
Gorai.001G211000 Gossypium raimondii HOM05D003251 ORTHO05D003770 6.6e-17 92.8 479 26.5
FAN02G1383 Fragaria x ananassa HOM05D003251 ORTHO05D003770 8.6e-17 92.4 493 26.0
Gohir.A07G182600 Gossypium hirsutum HOM05D003251 ORTHO05D003770 8.6e-17 92.4 479 26.3
Nitab4.5_0008720g0010 Nicotiana tabacum HOM05D003251 ORTHO05D003770 8.6e-17 92.4 213 33.8
Dinv15661 Davidia involucrata HOM05D003251 ORTHO05D003770 1.1e-16 92.0 225 32.9
Gohir.1Z049461 Gossypium hirsutum HOM05D003251 ORTHO05D003770 1.1e-16 92.0 479 26.3
ATR0763G034 Amborella trichopoda HOM05D003251 ORTHO05D003770 1.5e-16 91.7 256 33.6
Potri.005G205700 Populus trichocarpa HOM05D003251 ORTHO05D003770 1.5e-16 91.7 468 26.9
Hma1.2p1_2465F.1_g322630 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 1.9e-16 91.3 230 31.3
Oeu056851.1 Olea europaea HOM05D003251 ORTHO05D003770 2.5e-16 90.9 414 27.1
Phvul.006G023700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 2.5e-16 90.9 228 33.8
DCAR_023044 Daucus carota HOM05D003251 ORTHO05D003770 3.3e-16 90.5 382 28.0
FvH4_6g38770 Fragaria vesca HOM05D003251 ORTHO05D003770 3.3e-16 90.5 491 25.7
FAN09G3830 Fragaria x ananassa HOM05D003251 ORTHO05D003770 3.3e-16 90.5 495 25.5
Medtr5g090900 Medicago truncatula HOM05D003251 ORTHO05D003770 3.3e-16 90.5 448 26.6
PSO675G1711 Papaver somniferum HOM05D003251 ORTHO05D003770 3.3e-16 90.5 399 28.3
Sed0014508 Sechium edule HOM05D003251 ORTHO05D003770 3.3e-16 90.5 488 25.4
Ah.01g001900 Amaranthus hybridus HOM05D003251 ORTHO05D003770 4.3e-16 90.1 353 28.6
Cfa023559 Carpinus fangiana HOM05D003251 ORTHO05D003770 4.3e-16 90.1 485 27.4
Solyc12g006270.2 Solanum lycopersicum HOM05D003251 ORTHO05D003770 4.3e-16 90.1 212 34.0
Lj6g0022221 Lotus japonicus HOM05D003251 ORTHO05D003770 5.6e-16 89.7 416 26.2
HPP92_011705 Vanilla planifolia HOM05D003251 ORTHO05D003770 5.6e-16 89.7 349 28.4
arahy.Tifrunner.gnm1.ann1.0D8J24 Arachis hypogaea HOM05D003251 ORTHO05D003770 7.3e-16 89.4 222 32.9
CARHR006330 Cardamine hirsuta HOM05D003251 ORTHO05D003770 7.3e-16 89.4 401 27.9
ECA233G2088 Erigeron canadensis HOM05D003251 ORTHO05D003770 7.3e-16 89.4 436 25.9
Glyma.18G111600 Glycine max HOM05D003251 ORTHO05D003770 7.3e-16 89.4 369 28.7
Sp1g05380 Schrenkiella parvula HOM05D003251 ORTHO05D003770 9.5e-16 89.0 391 27.6
Sabra02G0046300 Salix brachista HOM05D003251 ORTHO05D003770 1.6e-15 88.2 236 32.2
Sed0023993 Sechium edule HOM05D003251 ORTHO05D003770 1.6e-15 88.2 383 28.2
VMungo0540G1164 Vigna mungo HOM05D003251 ORTHO05D003770 2.1e-15 87.8 247 32.4
arahy.Tifrunner.gnm1.ann1.RBT75F Arachis hypogaea HOM05D003251 ORTHO05D003770 2.8e-15 87.4 225 31.6
Carub.0001s0599 Capsella rubella HOM05D003251 ORTHO05D003770 2.8e-15 87.4 461 26.0
Ca_06258_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 2.8e-15 87.4 452 29.0
FAN14G2842 Fragaria x ananassa HOM05D003251 ORTHO05D003770 2.8e-15 87.4 491 26.1
Glyma.02G283700 Glycine max HOM05D003251 ORTHO05D003770 2.8e-15 87.4 432 25.7
AL1G16670 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 6.1e-15 86.3 479 26.7
CiPaw.03G190500 Carya illinoinensis HOM05D003251 ORTHO05D003770 1.0e-14 85.5 440 25.2
Glyma.08G306600 Glycine max HOM05D003251 ORTHO05D003770 1.0e-14 85.5 364 27.5
Nitab4.5_0001229g0020 Nicotiana tabacum HOM05D003251 ORTHO05D003770 1.4e-14 85.1 209 33.0
AT1G06660 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 1.8e-14 84.7 479 26.5
Migut.H01275 Erythranthe guttata HOM05D003251 ORTHO05D003770 2.3e-14 84.3 222 34.7
HPP92_011659 Vanilla planifolia HOM05D003251 ORTHO05D003770 2.3e-14 84.3 349 27.2
Cpa.g.sc50.118 Carica papaya HOM05D003251 ORTHO05D003770 3.0e-14 84.0 229 31.4
Medtr3g450760 Medicago truncatula HOM05D003251 ORTHO05D003770 4.0e-14 83.6 427 23.9
Eucgr.K01238 Eucalyptus grandis HOM05D003251 ORTHO05D003770 5.2e-14 83.2 458 25.8
Thhalv10007468m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 5.2e-14 83.2 480 27.3
FAN05G1089 Fragaria x ananassa HOM05D003251 ORTHO05D003770 6.8e-14 82.8 494 24.7
Nitab4.5_0003208g0060 Nicotiana tabacum HOM05D003251 ORTHO05D003770 6.8e-14 82.8 212 33.0
PGR042G3279 Punica granatum HOM05D003251 ORTHO05D003770 8.9e-14 82.4 228 31.6
THA.LOC104826243 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 8.9e-14 82.4 226 30.1
Aqoxy4G00020 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 1.2e-13 82.0 326 28.5
BolC8t47062H Brassica oleracea HOM05D003251 ORTHO05D003770 1.2e-13 82.0 446 26.5
DCAR_009819 Daucus carota HOM05D003251 ORTHO05D003770 1.5e-13 81.6 440 27.5
Hund08247 Selenicereus undatus HOM05D003251 ORTHO05D003770 1.5e-13 81.6 415 26.7
HPP92_013590 Vanilla planifolia HOM05D003251 ORTHO05D003770 2.0e-13 81.3 332 27.7
EL10Ac9g22841 Beta vulgaris HOM05D003251 ORTHO05D003770 2.6e-13 80.9 414 25.6
HanXRQChr17g0541161 Helianthus annuus HOM05D003251 ORTHO05D003770 2.6e-13 80.9 222 32.4
THA.LOC104800816 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 2.6e-13 80.9 229 33.2
Aa31LG6G9100 Aethionema arabicum HOM05D003251 ORTHO05D003770 3.4e-13 80.5 367 28.1
Cc08_g11770 Coffea canephora HOM05D003251 ORTHO05D003770 3.4e-13 80.5 213 31.9
Eucgr.A02029 Eucalyptus grandis HOM05D003251 ORTHO05D003770 3.4e-13 80.5 244 29.1
VMungo0647G1540 Vigna mungo HOM05D003251 ORTHO05D003770 5.7e-13 79.7 390 26.2
Actinidia18852 Actinidia chinensis HOM05D003251 ORTHO05D003770 7.5e-13 79.3 219 31.5
Actinidia35167 Actinidia chinensis HOM05D003251 ORTHO05D003770 9.8e-13 79.0 388 27.8
Lj8A97T49 Lonicera japonica HOM05D003251 ORTHO05D003770 9.8e-13 79.0 425 26.1
AUR62015130 Chenopodium quinoa HOM05D003251 ORTHO05D003770 1.3e-12 78.6 230 31.3
BraA08t35498Z Brassica rapa HOM05D003251 ORTHO05D003770 1.7e-12 78.2 443 26.4
Atru.chr6.2025 Acer truncatum HOM05D003251 ORTHO05D003770 2.2e-12 77.8 483 25.3
Gohir.D07G189401 Gossypium hirsutum HOM05D003251 ORTHO05D003770 2.2e-12 77.8 233 31.8
QL08p045144 Quercus lobata HOM05D003251 ORTHO05D003770 2.2e-12 77.8 226 32.3
HanXRQChr13g0387591 Helianthus annuus HOM05D003251 ORTHO05D003770 2.9e-12 77.4 203 30.5
Ca_14585_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 4.9e-12 76.6 438 24.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 4.9e-12 76.6 213 31.9
RcHm_v2.0_Chr2g0152321 Rosa chinensis HOM05D003251 ORTHO05D003770 8.3e-12 75.9 239 31.8
Psat5g198200 Pisum sativum HOM05D003251 ORTHO05D003770 1.1e-11 75.5 421 24.0
C08p02660 Brassica napus HOM05D003251 ORTHO05D003770 1.4e-11 75.1 443 25.5
TPR.G25285 Trifolium pratense HOM05D003251 ORTHO05D003770 1.4e-11 75.1 237 29.1
Phvul.008G195700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 1.8e-11 74.7 225 34.7
Sabra05G0156300 Salix brachista HOM05D003251 ORTHO05D003770 2.4e-11 74.3 462 26.0
A08p35910 Brassica napus HOM05D003251 ORTHO05D003770 3.2e-11 73.9 452 25.9
Carub.0004s1203 Capsella rubella HOM05D003251 ORTHO05D003770 4.1e-11 73.6 228 30.7
BcaNung05938 Brassica carinata HOM05D003251 ORTHO05D003770 5.9e-10 69.7 202 32.7
Os03g0777100 Oryza sativa ssp. japonica HOM05D003251 ORTHO05D003770 7.8e-10 69.3 256 27.7
SEGI_31357 Sequoiadendron giganteum HOM05D003251 ORTHO05D003770 1.0e-09 68.9 290 27.9
SGA_v2.0_scaffold73G24475 Striga asiatica HOM05D003251 ORTHO05D003770 1.3e-09 68.6 374 27.0
CANSAT64G1833 Cannabis sativa HOM05D003251 ORTHO05D003770 3.0e-09 67.4 432 26.4
MSTRG.14102 Avicennia marina HOM05D003251 ORTHO05D003770 3.9e-09 67.0 227 30.8
arahy.Tifrunner.gnm1.ann1.FIF49B Arachis hypogaea HOM05D003251 ORTHO05D003770 5.0e-09 66.6 216 28.7
Sc06g0009760 Simmondsia chinensis HOM05D003251 ORTHO05D003770 6.6e-09 66.2 395 23.5
arahy.Tifrunner.gnm1.ann1.XDTP3U Arachis hypogaea HOM05D003251 ORTHO05D003770 1.9e-08 64.7 216 28.7
AT2G30820 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 4.3e-08 63.5 213 30.5
MSTRG.14900 Avicennia marina HOM05D003251 ORTHO05D003770 5.6e-08 63.2 213 30.5
CAN.G275.13 Capsicum annuum HOM05D003251 ORTHO05D003770 5.6e-08 63.2 141 34.0
BcaB01g04080 Brassica carinata HOM05D003251 ORTHO05D003770 7.3e-08 62.8 220 29.5
Lsat_1_v5_gn_8_33181 Lactuca sativa HOM05D003251 ORTHO05D003770 7.3e-08 62.8 413 23.7
Zm00001eb213700 Zea mays HOM05D003251 ORTHO05D003770 1.2e-07 62.0 176 30.1
Lalb_Chr15g0081031 Lupinus albus HOM05D003251 ORTHO05D003770 1.6e-07 61.6 429 24.7
BcaC07g36797 Brassica carinata HOM05D003251 ORTHO05D003770 2.1e-07 61.2 199 30.7
Zm00001eb059360 Zea mays HOM05D003251 ORTHO05D003770 2.1e-07 61.2 386 21.8
Glyma.14G030800 Glycine max HOM05D003251 ORTHO05D003770 6.2e-07 59.7 229 30.1
HanXRQChr12g0366281 Helianthus annuus HOM05D003251 ORTHO05D003770 6.2e-07 59.7 322 26.1
Thhalv10017740m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 8.0e-07 59.3 403 24.6
Peaxi162Scf00359g00096 Petunia axillaris HOM05D003251 ORTHO05D003770 8.0e-07 59.3 124 34.7
Migut.M00075 Erythranthe guttata HOM05D003251 ORTHO05D003770 3.1e-06 57.4 229 28.4
AL4G25750 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 4.0e-06 57.0 367 22.9
A03p17210 Brassica napus HOM05D003251 ORTHO05D003770 6.8e-06 56.2 93 37.6
SalBow7G3844 Salvia bowleyana HOM05D003251 ORTHO05D003770 6.8e-06 56.2 59 50.8
BolC3t14406H Brassica oleracea HOM05D003251 ORTHO05D003770 8.9e-06 55.8 332 24.7
Sp4g13300 Schrenkiella parvula HOM05D003251 ORTHO05D003770 8.9e-06 55.8 229 27.1


User provided reference genes

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