Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 1.2e-118 429.9 226 100.0
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 7.3e-95 350.9 232 81.0
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 4.3e-79 298.5 204 75.0
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 9.3e-74 280.8 236 64.8
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.2e-73 280.4 244 61.5
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 6.0e-73 278.1 207 69.6
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 3.0e-72 275.8 216 64.4
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 3.9e-72 275.4 216 66.7
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 8.7e-72 274.2 238 61.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.5e-71 273.5 240 62.5
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.5e-71 272.7 202 68.3
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 4.3e-71 271.9 238 61.3
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 4.3e-71 271.9 238 60.9
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 5.6e-71 271.6 237 60.8
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 5.6e-71 271.6 209 67.0
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 5.6e-71 271.6 214 65.9
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 9.6e-71 270.8 207 67.1
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.3e-70 270.4 203 68.5
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.3e-70 270.4 245 58.4
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.1e-70 269.6 213 65.3
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 2.1e-70 269.6 207 67.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 4.8e-70 268.5 238 59.7
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 8.1e-70 267.7 216 63.0
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 8.1e-70 267.7 212 65.1
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 1.1e-69 267.3 204 67.2
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 1.4e-69 266.9 239 61.5
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.8e-69 266.5 213 64.8
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.8e-69 266.5 213 65.3
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 1.8e-69 266.5 235 60.4
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 2.4e-69 266.2 240 58.3
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.1e-69 265.8 228 58.3
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 3.1e-69 265.8 203 68.5
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 3.1e-69 265.8 229 61.1
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 3.1e-69 265.8 230 61.7
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 5.3e-69 265.0 247 59.1
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.2e-68 263.8 206 65.0
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.2e-68 263.8 224 62.1
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.4e-68 262.3 214 63.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 4.5e-68 261.9 243 58.8
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 5.8e-68 261.5 244 58.6
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 7.6e-68 261.2 237 59.1
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 7.6e-68 261.2 204 66.7
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.7e-67 260.0 205 63.9
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.7e-67 260.0 237 59.1
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.7e-67 260.0 188 68.1
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 2.2e-67 259.6 210 61.4
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.2e-67 259.6 188 67.0
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 2.2e-67 259.6 212 62.7
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.2e-67 259.6 234 59.4
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 2.9e-67 259.2 221 62.0
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 2.9e-67 259.2 189 70.4
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.9e-67 259.2 214 61.2
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.9e-67 259.2 243 58.4
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 3.8e-67 258.8 218 62.8
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 3.8e-67 258.8 208 62.5
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 6.4e-67 258.1 213 62.0
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 6.4e-67 258.1 203 64.0
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 8.4e-67 257.7 188 66.5
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 8.4e-67 257.7 219 62.6
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.4e-66 256.1 204 64.7
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 3.2e-66 255.8 206 62.6
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 3.2e-66 255.8 205 62.0
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 3.2e-66 255.8 204 64.2
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.2e-66 255.8 199 63.3
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 4.2e-66 255.4 273 53.8
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 5.5e-66 255.0 207 61.4
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.1e-66 254.6 204 63.7
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 7.1e-66 254.6 204 63.7
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 9.3e-66 254.2 220 57.7
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.2e-65 253.8 201 64.7
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.2e-65 253.8 246 55.7
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.6e-65 253.4 222 58.1
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 2.1e-65 253.1 204 63.2
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 2.7e-65 252.7 246 55.3
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 3.5e-65 252.3 206 62.1
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.5e-65 252.3 203 63.5
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 4.6e-65 251.9 207 60.4
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 6.0e-65 251.5 189 67.2
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.3e-64 250.4 207 61.8
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.8e-64 250.0 182 66.5
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 3.0e-64 249.2 204 63.2
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.9e-64 248.8 247 54.7
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 5.1e-64 248.4 246 53.7
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.1e-63 247.3 214 61.7
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.1e-63 247.3 223 57.8
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.6e-62 243.4 204 61.3
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 2.8e-62 242.7 244 56.6
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 6.2e-62 241.5 246 54.5
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 8.1e-62 241.1 204 60.8
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 8.1e-62 241.1 206 59.2
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 6.9e-61 238.0 204 60.3
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 9.0e-61 237.7 204 59.8
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.5e-60 236.9 207 61.8
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 2.6e-60 236.1 225 55.6
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.0e-59 234.2 224 54.0
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.3e-59 233.8 201 59.7
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.7e-59 233.4 224 54.0
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.2e-59 233.0 224 54.0
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.2e-59 233.0 224 53.6
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 3.8e-59 232.3 224 53.6
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 3.8e-59 232.3 204 58.8
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 4.9e-59 231.9 206 58.3
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 6.5e-59 231.5 204 59.8
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 6.5e-59 231.5 204 59.8
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 6.5e-59 231.5 201 57.2
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 8.4e-59 231.1 191 61.3
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 1.1e-58 230.7 223 53.8
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 2.5e-58 229.6 224 53.1
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 2.5e-58 229.6 224 53.1
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 2.5e-58 229.6 224 53.1
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 4.2e-58 228.8 202 56.4
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 7.1e-58 228.0 189 61.9
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 7.1e-58 228.0 205 58.0
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 9.3e-58 227.6 219 57.5
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 9.3e-58 227.6 224 52.2
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 9.3e-58 227.6 232 53.9
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 1.2e-57 227.3 202 55.9
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 1.2e-57 227.3 202 55.9
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 2.1e-57 226.5 203 55.2
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 2.7e-57 226.1 202 55.4
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 2.7e-57 226.1 202 55.4
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 2.7e-57 226.1 250 50.8
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 4.6e-57 225.3 188 57.4
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 6.0e-57 224.9 233 51.1
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 6.0e-57 224.9 205 56.6
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.0e-56 224.2 202 55.0
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 1.8e-56 223.4 189 58.2
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.9e-55 219.9 202 55.0
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 1.9e-55 219.9 202 53.5
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 2.5e-55 219.5 206 55.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 7.4e-55 218.0 202 54.0
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.7e-54 215.7 204 54.4
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.7e-54 215.7 206 54.9
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.7e-54 215.7 333 42.6
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 8.2e-54 214.5 184 57.1
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 3.1e-53 212.6 230 52.2
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.1e-53 212.2 186 57.0
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 4.1e-53 212.2 188 56.4
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 6.5e-51 204.9 359 39.3
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 4.2e-50 202.2 184 56.0
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 1.6e-49 200.3 205 55.6
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 2.1e-49 199.9 174 58.6
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 7.9e-49 198.0 197 53.8
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.3e-43 180.6 218 44.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 6.5e-43 178.3 241 45.2
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 4.2e-42 175.6 224 42.9
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 7.2e-42 174.9 193 52.8
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.1e-41 173.3 206 44.2
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.0e-40 171.0 214 46.7
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 1.1e-39 167.5 116 69.8
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 2.5e-39 166.4 116 69.8
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.3e-38 164.1 221 41.6
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 6.9e-37 158.3 141 54.6
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.6e-36 156.4 141 58.2
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 6.1e-33 145.2 162 51.2
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.7e-31 138.7 105 62.9
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.7e-30 137.1 157 45.2
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.2e-30 136.7 97 64.9
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 7.0e-29 131.7 154 48.1
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.6e-28 130.6 190 36.8
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 1.7e-27 127.1 185 34.1
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.8e-24 117.1 101 60.4
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 3.3e-23 112.8 184 32.6
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 1.6e-20 104.0 68 73.5
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.2e-18 95.9 68 67.6
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 7.2e-18 95.1 70 67.1
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 7.2e-18 95.1 74 63.5
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 7.2e-18 95.1 82 57.3
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 1.2e-17 94.4 210 31.0
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.1e-17 93.6 70 64.3
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 6.1e-17 92.0 70 64.3
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 5.2e-16 89.0 216 29.6
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 6.8e-16 88.6 81 58.0
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-14 84.0 66 60.6
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-13 80.9 66 59.1
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 7.7e-12 75.1 75 54.7
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.0e-11 74.7 59 61.0
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.7e-11 73.9 170 27.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-11 73.6 142 38.0
Cre11.g467569 Chlamydomonas reinhardtii HOM05D003160 ORTHO05D005967 1.6e-09 67.4 167 25.7
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 2.1e-09 67.0 172 30.2
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 1.8e-08 63.9 169 28.4
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 4.4e-07 59.3 178 28.7
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 3.7e-06 56.2 173 28.9


User provided reference genes

Program Settings