Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.9e-106 388.7 206 100.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.2e-83 313.5 203 81.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.0e-71 273.9 172 83.1
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.3e-69 264.6 200 68.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.1e-68 263.8 199 66.3
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.4e-68 262.7 181 71.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.4e-68 262.7 197 68.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 5.3e-68 261.5 197 68.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 6.9e-68 261.2 201 67.2
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.5e-67 260.0 198 67.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.0e-67 259.6 181 70.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 4.5e-67 258.5 196 67.3
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 7.7e-67 257.7 199 66.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.3e-66 256.9 197 65.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.7e-66 256.5 203 66.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.2e-66 256.1 199 63.8
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.2e-66 256.1 198 66.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.2e-66 256.1 197 65.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.9e-66 255.8 202 66.8
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.9e-66 255.8 187 69.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.9e-66 255.8 205 63.4
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.8e-66 255.4 196 64.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.0e-66 255.0 199 64.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 6.5e-66 254.6 196 65.3
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 6.5e-66 254.6 203 66.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.1e-65 253.8 196 66.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.4e-65 253.4 201 65.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.4e-65 253.4 200 67.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.4e-65 253.4 193 66.8
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.9e-65 253.1 181 69.1
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-65 253.1 198 65.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.5e-65 252.7 199 65.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.2e-65 252.3 198 65.7
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.2e-65 252.3 198 65.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.2e-65 252.3 183 67.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 3.2e-65 252.3 176 71.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.2e-65 252.3 198 64.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 4.2e-65 251.9 198 65.7
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.5e-65 251.5 202 65.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.5e-65 251.5 199 63.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 7.2e-65 251.1 199 63.8
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 9.4e-65 250.8 187 68.4
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.2e-64 250.4 173 70.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.2e-64 250.4 173 70.5
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.6e-64 250.0 200 64.5
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.6e-64 250.0 200 65.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.1e-64 249.6 201 65.7
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.7e-64 249.2 203 65.0
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.6e-64 248.8 198 64.6
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 6.1e-64 248.1 209 64.1
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 6.1e-64 248.1 203 64.5
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.1e-64 248.1 184 67.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 7.9e-64 247.7 180 66.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 7.9e-64 247.7 183 65.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 7.9e-64 247.7 181 71.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.9e-64 247.7 197 63.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.0e-63 247.3 196 66.3
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.0e-63 247.3 196 66.3
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.0e-63 247.3 197 63.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.8e-63 246.5 196 63.8
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.0e-63 245.7 156 75.6
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.9e-63 245.4 157 74.5
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.9e-63 245.4 203 63.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.9e-63 245.4 199 63.3
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 5.1e-63 245.0 167 72.5
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 8.8e-63 244.2 202 64.4
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-62 243.4 182 65.9
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.5e-62 243.4 205 62.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.5e-62 243.4 199 63.3
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.6e-62 242.7 199 62.3
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.3e-62 242.3 177 68.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.4e-62 241.9 196 62.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 5.7e-62 241.5 182 67.0
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 7.4e-62 241.1 203 61.1
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.3e-61 240.4 205 62.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.2e-61 239.6 179 67.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.2e-61 239.6 182 66.5
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.2e-61 239.6 182 66.5
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.2e-61 239.6 173 69.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.2e-61 239.6 191 64.9
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.8e-61 239.2 179 66.5
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.8e-61 239.2 182 66.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.8e-61 239.2 174 69.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.8e-61 238.4 172 68.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.8e-61 238.4 177 67.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 8.2e-61 237.7 196 61.2
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-60 237.3 214 59.8
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.8e-60 236.5 179 66.5
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 2.4e-60 236.1 204 61.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.3e-60 235.0 193 62.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.3e-60 235.0 147 77.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.9e-60 234.6 173 68.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.9e-60 234.6 196 62.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.9e-60 234.6 204 59.8
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 9.1e-60 234.2 197 62.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 2.0e-59 233.0 195 61.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.0e-59 233.0 199 60.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.6e-59 232.6 188 64.4
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.6e-59 232.6 196 60.7
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.6e-59 232.6 203 60.1
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 4.5e-59 231.9 196 60.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 5.9e-59 231.5 188 63.8
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.7e-58 229.9 191 62.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.7e-58 229.9 191 62.8
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.2e-58 229.6 196 59.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.9e-58 229.2 173 65.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 8.5e-58 227.6 196 58.2
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.9e-57 226.5 191 62.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.9e-57 226.5 180 65.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.2e-57 225.3 191 62.3
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.2e-57 225.3 191 62.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.5e-57 224.9 284 47.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.4e-57 224.2 167 68.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.6e-56 223.4 200 59.0
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.3e-55 219.5 205 59.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.3e-55 219.5 201 58.2
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.7e-55 218.0 218 55.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.0e-54 216.5 210 56.7
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.0e-54 216.5 202 57.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.0e-52 208.0 190 61.1
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 7.0e-52 208.0 196 56.1
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 5.0e-50 201.8 124 81.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.9e-49 199.9 200 56.0
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.6e-48 195.7 123 77.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.8e-47 193.4 177 55.9
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.8e-47 193.4 153 61.4
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 6.7e-47 191.4 162 61.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.8e-47 191.0 123 74.0
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.1e-44 184.1 188 53.2
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.1e-44 182.2 125 70.4
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.1e-41 174.1 203 52.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.2e-41 171.4 153 60.8
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 4.7e-40 168.7 118 70.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.6e-38 162.9 116 69.0
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.4e-38 162.5 152 53.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 7.5e-38 161.4 108 71.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.8e-36 156.8 95 83.2
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.1e-36 156.0 93 78.5
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.2e-35 154.1 175 50.9
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 5.0e-34 148.7 102 71.6
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.3e-33 146.0 188 46.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 3.6e-32 142.5 164 43.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.3e-26 123.2 175 45.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 4.4e-22 109.0 59 84.7
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.7e-21 105.9 55 89.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 6.6e-18 95.1 136 40.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.9e-17 93.6 74 60.8
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 4.3e-17 92.4 74 60.8
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.6e-16 90.5 59 83.1
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.7e-16 89.0 93 54.8
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.1e-15 87.8 147 37.4
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.3e-10 70.1 47 70.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.5e-09 66.6 86 45.3
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.6e-08 63.9 64 50.0
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.1e-08 63.5 39 79.5


User provided reference genes

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