Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.0e-134 482.6 288 100.0
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.4e-79 300.4 284 67.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.3e-75 287.3 199 77.9
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.6e-75 287.0 199 77.4
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 6.3e-75 285.0 282 64.2
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 6.3e-75 285.0 199 76.9
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 8.2e-75 284.6 199 76.9
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.1e-74 284.3 199 76.9
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.1e-74 284.3 199 76.9
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.4e-74 283.9 184 80.4
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 2.4e-74 283.1 199 75.9
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 2.4e-74 283.1 194 76.8
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.1e-74 282.7 199 76.4
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.1e-74 282.7 199 76.4
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.3e-74 282.0 199 75.9
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 5.3e-74 282.0 199 74.9
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 6.9e-74 281.6 199 76.4
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 6.9e-74 281.6 199 76.4
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 6.9e-74 281.6 199 76.4
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 6.9e-74 281.6 199 75.9
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 9.0e-74 281.2 199 75.4
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.2e-73 280.8 199 74.9
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.5e-73 280.4 297 58.6
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 2.0e-73 280.0 198 75.3
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 2.6e-73 279.6 200 74.0
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.6e-73 279.6 199 75.4
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.6e-73 279.6 200 74.5
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.4e-73 279.3 194 76.8
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 3.4e-73 279.3 199 74.9
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 3.4e-73 279.3 194 77.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 3.4e-73 279.3 199 75.4
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 4.5e-73 278.9 194 76.3
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 4.5e-73 278.9 199 75.4
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 4.5e-73 278.9 280 62.1
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 5.9e-73 278.5 198 74.7
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 5.9e-73 278.5 194 77.3
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 7.7e-73 278.1 199 74.4
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 7.7e-73 278.1 193 77.2
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 7.7e-73 278.1 311 57.6
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.0e-72 277.7 199 74.4
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.3e-72 277.3 194 76.3
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.7e-72 276.9 200 73.0
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.7e-72 276.9 199 75.4
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 2.2e-72 276.6 194 76.8
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 2.2e-72 276.6 199 73.4
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.9e-72 276.2 199 75.9
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.9e-72 276.2 200 73.0
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.9e-72 276.2 193 77.2
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.8e-72 275.8 199 73.4
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 5.0e-72 275.4 199 73.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 8.5e-72 274.6 199 74.9
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.1e-71 274.2 200 73.5
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.1e-71 274.2 189 75.1
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.1e-71 274.2 200 73.5
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.4e-71 273.9 194 76.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.5e-71 273.1 282 60.3
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.5e-71 273.1 199 76.4
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 2.5e-71 273.1 193 75.1
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 3.2e-71 272.7 196 74.5
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 3.2e-71 272.7 199 73.9
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.2e-71 272.7 199 73.4
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 3.2e-71 272.7 199 73.4
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.2e-71 272.3 299 57.2
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 4.2e-71 272.3 193 75.1
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 5.5e-71 271.9 199 74.4
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 7.2e-71 271.6 199 72.9
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 7.2e-71 271.6 199 72.9
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 9.4e-71 271.2 201 73.6
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 9.4e-71 271.2 199 73.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 9.4e-71 271.2 201 71.6
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.2e-70 270.8 196 72.4
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 1.6e-70 270.4 201 70.6
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.6e-70 270.4 199 72.4
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 2.1e-70 270.0 200 71.5
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.1e-70 270.0 198 72.7
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 2.7e-70 269.6 200 71.5
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.6e-70 268.9 293 56.7
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 4.6e-70 268.9 200 71.0
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 4.6e-70 268.9 200 71.0
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 4.6e-70 268.9 200 71.0
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 6.1e-70 268.5 200 72.5
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.1e-70 268.5 200 72.5
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.0e-69 267.7 301 55.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.0e-69 267.7 198 72.2
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.0e-69 267.7 198 71.7
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-69 267.7 291 58.8
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.4e-69 267.3 197 72.1
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.4e-69 267.3 200 70.5
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-69 266.5 200 70.5
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.3e-69 266.5 199 73.4
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.0e-69 266.2 291 59.1
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 3.0e-69 266.2 200 70.0
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 3.9e-69 265.8 200 70.5
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 3.9e-69 265.8 297 56.6
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 5.1e-69 265.4 200 69.5
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 5.1e-69 265.4 200 70.0
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 6.7e-69 265.0 200 69.5
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.1e-68 264.2 200 69.5
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.1e-68 264.2 199 72.9
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.1e-68 264.2 193 74.1
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.1e-68 264.2 199 71.4
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.5e-68 263.8 198 70.2
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 1.5e-68 263.8 199 71.4
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.0e-68 263.5 295 58.0
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.0e-68 263.5 204 70.6
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 2.0e-68 263.5 199 71.4
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.6e-68 263.1 192 72.4
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 2.6e-68 263.1 181 76.2
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.3e-68 262.7 284 57.0
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.4e-68 262.3 194 70.6
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.4e-68 261.5 288 58.0
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 1.3e-67 260.8 200 69.5
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.7e-67 260.4 200 70.0
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 2.2e-67 260.0 187 73.8
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.8e-67 259.6 293 57.0
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.3e-67 258.5 288 58.0
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 6.3e-67 258.5 198 70.7
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.4e-66 257.3 292 54.8
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.4e-66 257.3 292 54.8
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.4e-66 256.5 303 54.1
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 5.3e-66 255.4 204 68.1
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 9.1e-66 254.6 199 69.3
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 9.1e-66 254.6 188 69.7
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 7.7e-65 251.5 190 71.6
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.7e-65 251.5 300 55.7
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.2e-64 250.0 189 70.9
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 8.5e-64 248.1 266 57.5
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 3.2e-63 246.1 175 74.3
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.2e-63 246.1 191 68.1
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 2.7e-62 243.0 192 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 3.6e-62 242.7 192 65.6
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 4.7e-62 242.3 190 66.8
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 6.1e-62 241.9 245 58.8
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 7.9e-62 241.5 189 66.7
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.4e-61 240.7 202 63.9
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.6e-60 236.5 186 67.2
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 2.2e-59 233.4 281 53.4
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 2.8e-59 233.0 167 71.3
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 3.7e-59 232.6 182 72.0
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 9.1e-58 228.0 264 51.9
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.2e-57 227.6 165 71.5
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 2.9e-56 223.0 164 70.1
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.2e-54 217.6 279 49.5
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 8.8e-53 211.5 192 60.9
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 2.6e-52 209.9 179 62.6
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 2.8e-51 206.5 181 60.2
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 5.0e-40 169.1 183 53.6
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.9e-39 167.2 118 70.3
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.8e-35 153.3 194 49.0
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.0e-33 147.1 98 81.6
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 4.5e-33 146.0 288 40.3
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 9.8e-28 128.3 286 37.1
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 8.3e-27 125.2 90 68.9
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 8.3e-27 125.2 95 69.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 3.6e-22 109.8 193 39.9
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.0e-21 108.2 179 36.9
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.5e-20 104.4 87 60.9
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 4.1e-18 96.3 75 73.3
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 4.1e-18 96.3 76 63.2
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 4.3e-15 86.3 173 37.0
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.1e-14 84.0 92 53.3
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 2.8e-14 83.6 92 53.3
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 7.3e-07 58.9 57 52.6


User provided reference genes

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