Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0631300 Oryza sativa ssp. japonica HOM05D003905 ORTHO05D005329 2.0e-303 1045.0 544 100.0
Zm00001eb228940 Zea mays HOM05D003905 ORTHO05D005329 1.4e-181 640.2 538 66.5
MBI05_g23390_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 8.0e-47 192.6 594 34.7
CiPaw.08G067200 Carya illinoinensis HOM05D003905 ORTHO05D005329 5.2e-46 189.9 547 32.9
Duzib116G0388 Durio zibethinus HOM05D003905 ORTHO05D005329 5.7e-45 186.4 562 32.9
PSO675G3234 Papaver somniferum HOM05D003905 ORTHO05D005329 1.4e-43 181.8 591 33.8
Cfa013971 Carpinus fangiana HOM05D003905 ORTHO05D005329 2.4e-43 181.0 558 33.5
Ciclev10000122m.g Citrus clementina HOM05D003905 ORTHO05D005329 2.4e-43 181.0 551 33.2
Atru.chr13.267 Acer truncatum HOM05D003905 ORTHO05D005329 3.1e-43 180.6 539 33.4
PSO541G2778 Papaver somniferum HOM05D003905 ORTHO05D005329 5.4e-43 179.9 588 34.0
TAR381G0315 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.0e-42 177.9 559 32.6
TAR381G1218 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.7e-42 177.6 558 31.7
TAR376G0902 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.9e-41 174.1 567 32.3
QL02p011991 Quercus lobata HOM05D003905 ORTHO05D005329 3.8e-41 173.7 589 31.7
Phvul.001G005400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 6.6e-41 172.9 540 33.9
CiPaw.07G148100 Carya illinoinensis HOM05D003905 ORTHO05D005329 8.6e-41 172.6 546 32.1
Nn5g30748 Nelumbo nucifera HOM05D003905 ORTHO05D005329 8.6e-41 172.6 404 35.1
Dinv39531 Davidia involucrata HOM05D003905 ORTHO05D005329 4.2e-40 170.2 584 30.8
COL.COLO4_26128 Corchorus olitorius HOM05D003905 ORTHO05D005329 9.5e-40 169.1 598 30.9
Duzib041G0770 Durio zibethinus HOM05D003905 ORTHO05D005329 3.6e-39 167.2 564 31.6
Thecc.08G046500 Theobroma cacao HOM05D003905 ORTHO05D005329 4.7e-39 166.8 555 31.9
MD15G1010900 Malus domestica HOM05D003905 ORTHO05D005329 6.1e-39 166.4 556 31.8
Cc10_g01500 Coffea canephora HOM05D003905 ORTHO05D005329 8.0e-39 166.0 577 33.3
TWI36G1438 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 8.0e-39 166.0 547 32.2
Prupe.1G363500 Prunus persica HOM05D003905 ORTHO05D005329 1.0e-38 165.6 555 32.3
VMungo0647G0001 Vigna mungo HOM05D003905 ORTHO05D005329 1.4e-38 165.2 572 33.2
Manes.05G145700 Manihot esculenta HOM05D003905 ORTHO05D005329 1.8e-38 164.9 562 33.3
Nitab4.5_0000337g0040 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.8e-38 164.9 539 31.0
Potri.002G020000 Populus trichocarpa HOM05D003905 ORTHO05D005329 2.3e-38 164.5 566 31.8
Glyma.17G258900 Glycine max HOM05D003905 ORTHO05D005329 5.2e-38 163.3 571 32.0
Actinidia16997 Actinidia chinensis HOM05D003905 ORTHO05D005329 6.8e-38 162.9 539 33.4
Duzib093G0852 Durio zibethinus HOM05D003905 ORTHO05D005329 1.5e-37 161.8 557 31.1
CANSAT25G2239 Cannabis sativa HOM05D003905 ORTHO05D005329 2.0e-37 161.4 575 31.3
Potri.005G241400 Populus trichocarpa HOM05D003905 ORTHO05D005329 2.0e-37 161.4 558 31.0
Psat6g002200 Pisum sativum HOM05D003905 ORTHO05D005329 3.4e-37 160.6 554 31.4
CAN.G1925.3 Capsicum annuum HOM05D003905 ORTHO05D005329 5.7e-37 159.8 548 31.2
Medtr1g025500 Medicago truncatula HOM05D003905 ORTHO05D005329 5.7e-37 159.8 505 31.7
Nitab4.5_0005970g0010 Nicotiana tabacum HOM05D003905 ORTHO05D005329 5.7e-37 159.8 566 31.1
TPR.G26376 Trifolium pratense HOM05D003905 ORTHO05D005329 5.7e-37 159.8 554 32.7
Gorai.009G193800 Gossypium raimondii HOM05D003905 ORTHO05D005329 9.8e-37 159.1 581 31.7
Ca_13435_v3 Cicer arietinum L. HOM05D003905 ORTHO05D005329 1.3e-36 158.7 433 34.4
Peaxi162Scf00553g00071 Petunia axillaris HOM05D003905 ORTHO05D005329 1.7e-36 158.3 584 30.8
Glyma.14G219900 Glycine max HOM05D003905 ORTHO05D005329 2.9e-36 157.5 563 32.1
Gohir.D05G188500 Gossypium hirsutum HOM05D003905 ORTHO05D005329 3.7e-36 157.1 581 31.5
Sabra02G0016300 Salix brachista HOM05D003905 ORTHO05D005329 3.7e-36 157.1 566 31.6
CSS0039596 Camellia sinensis var. sinensis HOM05D003905 ORTHO05D005329 6.4e-36 156.4 561 31.9
Manes.18G012100 Manihot esculenta HOM05D003905 ORTHO05D005329 6.4e-36 156.4 558 31.7
PGSC0003DMG400029336 Solanum tuberosum HOM05D003905 ORTHO05D005329 8.3e-36 156.0 539 30.8
CsaV3_3G045950 Cucumis sativus L. HOM05D003905 ORTHO05D005329 1.8e-35 154.8 541 30.1
TAR625G1519 Trochodendron aralioides HOM05D003905 ORTHO05D005329 4.1e-35 153.7 536 31.3
DCAR_016728 Daucus carota HOM05D003905 ORTHO05D005329 5.4e-35 153.3 569 32.3
Glyma.06G023600 Glycine max HOM05D003905 ORTHO05D005329 7.0e-35 152.9 588 31.8
TWI56G0857 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 7.0e-35 152.9 560 31.8
MSTRG.22343 Avicennia marina HOM05D003905 ORTHO05D005329 9.2e-35 152.5 566 30.4
Sabra05G0186900 Salix brachista HOM05D003905 ORTHO05D005329 9.2e-35 152.5 554 30.3
Lj5g0002583 Lotus japonicus HOM05D003905 ORTHO05D005329 2.0e-34 151.4 541 31.6
ClCG05G018200 Citrullus lanatus HOM05D003905 ORTHO05D005329 1.0e-33 149.1 583 29.7
MELO3C003744.2 Cucumis melo HOM05D003905 ORTHO05D005329 1.0e-33 149.1 543 29.8
MSTRG.25260 Avicennia marina HOM05D003905 ORTHO05D005329 1.3e-33 148.7 583 30.9
FvH4_2g38250 Fragaria vesca HOM05D003905 ORTHO05D005329 1.3e-33 148.7 549 32.2
TWI12G0098 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 2.3e-33 147.9 553 30.7
FAN20G1912 Fragaria x ananassa HOM05D003905 ORTHO05D005329 2.9e-33 147.5 548 31.8
Oeu014169.1 Olea europaea HOM05D003905 ORTHO05D005329 2.9e-33 147.5 569 30.1
Sopen12g031180 Solanum pennellii HOM05D003905 ORTHO05D005329 2.9e-33 147.5 539 30.2
Sc15g0004870 Simmondsia chinensis HOM05D003905 ORTHO05D005329 1.1e-32 145.6 551 31.2
MD08G1010900 Malus domestica HOM05D003905 ORTHO05D005329 1.9e-32 144.8 559 31.5
Gohir.A06G002700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 2.5e-32 144.4 551 31.6
Sed0006884 Sechium edule HOM05D003905 ORTHO05D005329 5.6e-32 143.3 601 30.4
Lj5g0020561 Lotus japonicus HOM05D003905 ORTHO05D005329 7.3e-32 142.9 574 30.8
MSTRG.24238 Avicennia marina HOM05D003905 ORTHO05D005329 9.5e-32 142.5 587 29.1
Oeu061973.1 Olea europaea HOM05D003905 ORTHO05D005329 9.5e-32 142.5 567 28.0
Migut.N03170 Erythranthe guttata HOM05D003905 ORTHO05D005329 1.2e-31 142.1 582 29.9
Gorai.010G002900 Gossypium raimondii HOM05D003905 ORTHO05D005329 1.2e-31 142.1 539 30.6
Phvul.009G009400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 2.1e-31 141.4 547 34.0
VMungo1309G0723 Vigna mungo HOM05D003905 ORTHO05D005329 3.6e-31 140.6 565 32.6
Glyma.04G023600 Glycine max HOM05D003905 ORTHO05D005329 4.7e-31 140.2 549 31.3
Hma1.2p1_0023F.1_g015570 Hydrangea macrophylla HOM05D003905 ORTHO05D005329 4.7e-31 140.2 563 29.7
MBI09_g14157_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 8.0e-31 139.4 557 29.3
RcHm_v2.0_Chr6g0303121 Rosa chinensis HOM05D003905 ORTHO05D005329 8.0e-31 139.4 546 32.8
Lalb_Chr23g0266101 Lupinus albus HOM05D003905 ORTHO05D005329 1.0e-30 139.0 588 31.1
Nitab4.5_0003251g0050 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.0e-30 139.0 555 30.3
Gohir.D06G005700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 6.8e-30 136.3 539 30.2
Lalb_Chr08g0246181 Lupinus albus HOM05D003905 ORTHO05D005329 8.9e-30 136.0 566 30.2
Gohir.A05G185700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 3.4e-29 134.0 373 34.9
AUR62035030 Chenopodium quinoa HOM05D003905 ORTHO05D005329 3.7e-28 130.6 552 29.9
Nn6g32019 Nelumbo nucifera HOM05D003905 ORTHO05D005329 3.7e-28 130.6 485 30.7
ATR0579G136 Amborella trichopoda HOM05D003905 ORTHO05D005329 6.4e-28 129.8 525 32.0
ATR1134G065 Amborella trichopoda HOM05D003905 ORTHO05D005329 6.4e-28 129.8 624 29.8
SalBow7G0836 Salvia bowleyana HOM05D003905 ORTHO05D005329 1.4e-27 128.6 563 30.2
Lj4C798T8 Lonicera japonica HOM05D003905 ORTHO05D005329 4.1e-27 127.1 583 29.7
Sed0012955 Sechium edule HOM05D003905 ORTHO05D005329 4.1e-27 127.1 514 28.6
Lalb_Chr11g0061811 Lupinus albus HOM05D003905 ORTHO05D005329 5.4e-27 126.7 576 28.6
SEGI_23721 Sequoiadendron giganteum HOM05D003905 ORTHO05D005329 7.0e-27 126.3 606 28.9
TAR381G0253 Trochodendron aralioides HOM05D003905 ORTHO05D011420 9.2e-27 125.9 450 30.9
Eucgr.H00969 Eucalyptus grandis HOM05D003905 ORTHO05D005329 1.6e-26 125.2 545 30.6
Dinv31863 Davidia involucrata HOM05D003905 ORTHO05D005329 2.0e-26 124.8 547 28.0
Solyc12g089320.3 Solanum lycopersicum HOM05D003905 ORTHO05D005329 4.6e-26 123.6 539 28.6
EL10Ac1g02168 Beta vulgaris HOM05D003905 ORTHO05D005329 6.0e-26 123.2 432 31.2
AUR62040550 Chenopodium quinoa HOM05D003905 ORTHO05D005329 6.0e-26 123.2 551 29.9
DCAR_013879 Daucus carota HOM05D003905 ORTHO05D005329 8.6e-25 119.4 568 31.0
Migut.C00854 Erythranthe guttata HOM05D003905 ORTHO05D005329 3.3e-24 117.5 530 28.1
Oeu054487.1 Olea europaea HOM05D003905 ORTHO05D005329 3.3e-24 117.5 584 28.1
DCAR_013878 Daucus carota HOM05D003905 ORTHO05D005329 2.1e-23 114.8 572 29.4
CDE04G0614 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 2.8e-23 114.4 544 29.6
Sabra13G0112200 Salix brachista HOM05D003905 ORTHO05D005329 3.6e-23 114.0 360 31.7
CDE02G0563 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 1.1e-22 112.5 488 30.9
GSVIVG01024041001 Vitis vinifera HOM05D003905 ORTHO05D005329 2.3e-22 111.3 544 27.6
Oeu001044.1 Olea europaea HOM05D003905 ORTHO05D005329 3.1e-22 110.9 537 30.4
Lj4C22T7 Lonicera japonica HOM05D003905 ORTHO05D005329 1.5e-21 108.6 569 29.2
Rhsim06G0019800 Rhododendron simsii HOM05D003905 ORTHO05D005329 9.8e-21 105.9 581 29.1
RhsimUnG0065300 Rhododendron simsii HOM05D003905 ORTHO05D005329 9.8e-21 105.9 533 29.1
TAR624G1117 Trochodendron aralioides HOM05D003905 ORTHO05D011420 3.7e-20 104.0 425 28.7
THA.LOC104806874 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 6.4e-20 103.2 576 28.8
unitig_8.g3383 Utricularia gibba HOM05D003905 ORTHO05D005329 8.3e-20 102.8 554 27.3
Aqoxy5G01812 Aquilegia oxysepala HOM05D003905 ORTHO05D005329 1.9e-19 101.7 589 29.2
Lsat_1_v5_gn_0_1320 Lactuca sativa HOM05D003905 ORTHO05D005329 3.2e-19 100.9 475 29.9
Cpa.g.sc26.312 Carica papaya HOM05D003905 ORTHO05D005329 5.4e-19 100.1 320 34.7
AT4G24200 Arabidopsis thaliana HOM05D003905 ORTHO05D005329 3.5e-18 97.4 479 29.0
AL7G29080 Arabidopsis lyrata HOM05D003905 ORTHO05D005329 4.6e-18 97.1 478 29.7
CARHR231610 Cardamine hirsuta HOM05D003905 ORTHO05D005329 1.0e-17 95.9 440 29.5
Oeu046285.1 Olea europaea HOM05D003905 ORTHO05D005329 1.0e-17 95.9 557 28.5
unitig_22.g6796 Utricularia gibba HOM05D003905 ORTHO05D005329 1.0e-17 95.9 556 26.1
TAR624G0280 Trochodendron aralioides HOM05D003905 ORTHO05D011420 2.3e-17 94.7 460 27.0
Carub.0007s1689 Capsella rubella HOM05D003905 ORTHO05D005329 1.5e-16 92.0 557 26.8
PGR083G2535 Punica granatum HOM05D003905 ORTHO05D005329 3.3e-16 90.9 537 27.0
TAR628G1379 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.2e-15 89.0 255 31.0
Ah.11g039850 Amaranthus hybridus HOM05D003905 ORTHO05D005329 2.1e-15 88.2 549 28.2
ECA238G1952 Erigeron canadensis HOM05D003905 ORTHO05D005329 8.1e-15 86.3 541 28.5
TAR628G0881 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.1e-14 85.9 309 33.3
FAN08G2565 Fragaria x ananassa HOM05D003905 ORTHO05D011420 1.8e-14 85.1 444 27.0
THA.LOC104814731 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 6.8e-14 83.2 335 30.4
FvH4_5g32010 Fragaria vesca HOM05D003905 ORTHO05D011420 1.2e-13 82.4 482 26.1
FAN18G0158 Fragaria x ananassa HOM05D003905 ORTHO05D011420 1.2e-13 82.4 482 26.1
GSVIVG01009936001 Vitis vinifera HOM05D003905 ORTHO05D005329 1.2e-13 82.4 291 31.6
HanXRQChr14g0431231 Helianthus annuus HOM05D003905 ORTHO05D005329 2.6e-13 81.3 556 29.1
RcHm_v2.0_Chr7g0228011 Rosa chinensis HOM05D003905 ORTHO05D011420 4.4e-13 80.5 486 27.6
Prupe.1G553900 Prunus persica HOM05D003905 ORTHO05D011420 2.2e-12 78.2 437 27.9
Sp7g22170 Schrenkiella parvula HOM05D003905 ORTHO05D005329 2.2e-12 78.2 483 28.0
ECA238G4590 Erigeron canadensis HOM05D002487 ORTHO05D002748 6.4e-12 76.6 413 27.4
FAN04G1043 Fragaria x ananassa HOM05D003905 ORTHO05D011420 1.4e-11 75.5 482 25.5
BolC7t45844H Brassica oleracea HOM05D003905 ORTHO05D005329 7.1e-11 73.2 564 25.7
Hund02720 Selenicereus undatus HOM05D002487 ORTHO05D002748 7.1e-11 73.2 445 29.4
Haze_22650 Corylus avellana HOM05D003905 ORTHO05D005329 2.1e-10 71.6 192 32.3
A03p55230 Brassica napus HOM05D003905 ORTHO05D005329 4.6e-10 70.5 554 25.8
BraA03t14582Z Brassica rapa HOM05D003905 ORTHO05D005329 4.6e-10 70.5 554 25.8
MBI10_g30419_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 4.6e-10 70.5 270 33.0
C07p53520 Brassica napus HOM05D003905 ORTHO05D005329 1.0e-09 69.3 590 26.3
ECA232G5024 Erigeron canadensis HOM05D003905 ORTHO05D005329 1.3e-09 68.9 405 27.7
Thhalv10027094m.g Eutrema salsugineum HOM05D003905 ORTHO05D005329 1.3e-09 68.9 560 25.7
AagrBONN_evm.TU.Sc2ySwM_344.3138 Anthoceros agrestis HOM05D002487 ORTHO05D002748 2.3e-09 68.2 343 27.7
HanXRQChr06g0184651 Helianthus annuus HOM05D003905 ORTHO05D005329 2.3e-09 68.2 438 27.9
BcaC06g32891 Brassica carinata HOM05D003905 ORTHO05D005329 5.1e-09 67.0 587 26.4
HanXRQChr15g0474451 Helianthus annuus HOM05D002487 ORTHO05D002748 6.6e-09 66.6 505 28.1
TPR.G2286 Trifolium pratense HOM05D002487 ORTHO05D002748 6.6e-09 66.6 438 29.0
A09p07890 Brassica napus HOM05D002487 ORTHO05D002748 1.5e-08 65.5 442 27.1
BraA09t36440Z Brassica rapa HOM05D002487 ORTHO05D002748 1.5e-08 65.5 442 27.1
ECA246G5268 Erigeron canadensis HOM05D002487 ORTHO05D002748 1.5e-08 65.5 411 28.0
QL12p004280 Quercus lobata HOM05D003905 ORTHO05D005329 1.5e-08 65.5 170 33.5
C09p08890 Brassica napus HOM05D002487 ORTHO05D002748 1.9e-08 65.1 465 28.2
BolC9t53802H Brassica oleracea HOM05D002487 ORTHO05D002748 1.9e-08 65.1 465 28.2
Potri.015G072800 Populus trichocarpa HOM05D002487 ORTHO05D002748 3.3e-08 64.3 493 25.6
QL02p026094 Quercus lobata HOM05D003905 ORTHO05D011420 3.3e-08 64.3 592 25.3
Mapoly0054s0088 Marchantia polymorpha HOM05D002487 ORTHO05D002748 4.3e-08 63.9 516 26.9
Sabra15G0097000 Salix brachista HOM05D002487 ORTHO05D002748 7.3e-08 63.2 462 26.4
BcaC04g23390 Brassica carinata HOM05D002487 ORTHO05D002748 1.6e-07 62.0 465 27.1
Dinv35034 Davidia involucrata HOM05D002487 ORTHO05D002748 1.6e-07 62.0 445 28.1
CARHR276680 Cardamine hirsuta HOM05D002487 ORTHO05D002748 2.8e-07 61.2 437 27.0
Mapoly0054s0081 Marchantia polymorpha HOM05D002487 ORTHO05D002748 2.8e-07 61.2 509 25.1
CDE10G0392 Ceratophyllum demersum HOM05D002487 ORTHO05D002748 3.6e-07 60.8 273 30.0
Medtr6g007787 Medicago truncatula HOM05D002487 ORTHO05D002748 4.7e-07 60.5 442 29.4
CDE10G1227 Ceratophyllum demersum HOM05D002487 ORTHO05D002748 1.1e-06 59.3 267 28.8
SEGI_38582 Sequoiadendron giganteum HOM05D002487 ORTHO05D002748 1.4e-06 58.9 283 29.3
Zm00001eb024560 Zea mays HOM05D002487 ORTHO05D002748 1.4e-06 58.9 242 28.9
EL10Ac5g10809 Beta vulgaris HOM05D002487 ORTHO05D002748 1.8e-06 58.5 441 26.3
Lalb_Chr21g0319331 Lupinus albus HOM05D002487 ORTHO05D002748 2.4e-06 58.2 393 27.0
Oeu022171.1 Olea europaea HOM05D002487 ORTHO05D002748 2.4e-06 58.2 452 26.1
SEGI_41621 Sequoiadendron giganteum HOM05D002487 ORTHO05D002748 2.4e-06 58.2 457 26.0
Pp3c11_22570 Physcomitrium patens HOM05D002487 ORTHO05D002748 3.1e-06 57.8 138 33.3
Solyc03g114060.3 Solanum lycopersicum HOM05D002487 ORTHO05D002748 3.1e-06 57.8 458 27.7
Manes.14G068800 Manihot esculenta HOM05D002487 ORTHO05D002748 5.2e-06 57.0 463 25.9
Sopen03g033110 Solanum pennellii HOM05D002487 ORTHO05D002748 5.2e-06 57.0 458 27.7
Ca_04215_v3 Cicer arietinum L. HOM05D002487 ORTHO05D002748 6.8e-06 56.6 470 27.2


User provided reference genes

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