Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.9e-73 278.5 142 100.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.1e-43 180.3 101 91.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 4.7e-39 164.9 101 82.2
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.7e-28 129.8 99 60.6
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.2e-28 127.5 99 58.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.4e-27 126.7 99 58.6
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.8e-27 126.3 99 58.6
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.3e-27 124.8 101 58.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 7.0e-27 124.4 99 58.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 9.1e-27 124.0 99 56.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 9.1e-27 124.0 99 56.6
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 9.1e-27 124.0 99 56.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 9.1e-27 124.0 99 54.5
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.6e-26 123.2 99 57.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.7e-26 122.5 99 58.6
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.5e-26 122.1 99 55.6
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.5e-26 121.7 99 54.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 4.5e-26 121.7 99 56.6
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.9e-26 121.3 99 56.6
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.9e-26 121.3 99 56.6
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 7.7e-26 120.9 99 56.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.7e-25 119.8 99 56.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.2e-25 119.4 99 56.6
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.2e-25 119.4 99 56.6
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.9e-25 119.0 99 56.6
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 5.0e-25 118.2 132 45.5
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.5e-25 117.5 99 55.6
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 8.5e-25 117.5 99 54.5
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.1e-24 117.1 99 55.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.5e-24 116.7 99 55.6
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.5e-24 116.7 101 52.5
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.5e-24 116.7 99 55.6
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.9e-24 116.3 99 50.5
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.9e-24 116.3 99 52.5
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.5e-24 115.9 98 56.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.2e-24 115.5 99 54.5
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 9.4e-24 114.0 118 45.8
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 9.4e-24 114.0 99 53.5
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 9.4e-24 114.0 99 53.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 9.4e-24 114.0 99 53.5
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.2e-23 113.6 99 52.5
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.2e-23 113.6 99 53.5
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.6e-23 113.2 99 51.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.7e-23 112.5 99 52.5
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.6e-23 112.1 99 52.5
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 3.6e-23 112.1 99 52.5
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 3.6e-23 112.1 99 53.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.7e-23 111.7 101 54.5
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 6.1e-23 111.3 99 52.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.0e-23 110.9 99 51.5
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 8.0e-23 110.9 132 43.9
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.0e-22 110.5 99 51.5
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.0e-22 110.5 101 50.5
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.0e-22 110.5 99 50.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.0e-22 110.5 99 50.5
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.0e-22 110.5 98 53.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.4e-22 110.2 132 44.7
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.4e-22 110.2 132 43.9
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.3e-22 109.4 99 50.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.3e-22 109.4 101 46.5
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.3e-22 109.4 113 47.8
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.3e-22 109.4 101 48.5
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.0e-22 109.0 123 46.3
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-22 109.0 123 46.3
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 3.0e-22 109.0 99 50.5
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 3.0e-22 109.0 99 50.5
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 4.0e-22 108.6 102 49.0
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.2e-22 108.2 101 48.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 5.2e-22 108.2 99 49.5
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 5.2e-22 108.2 99 48.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 5.2e-22 108.2 99 51.5
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 5.2e-22 108.2 101 52.5
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.2e-22 108.2 101 51.5
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.8e-22 107.8 99 51.5
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 8.8e-22 107.5 101 47.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 8.8e-22 107.5 101 47.5
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 8.8e-22 107.5 99 49.5
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.2e-21 107.1 117 47.9
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-21 107.1 101 47.5
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-21 107.1 102 50.0
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-21 107.1 101 47.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-21 107.1 101 47.5
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-21 107.1 101 47.5
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.2e-21 107.1 99 49.5
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.2e-21 107.1 99 50.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.2e-21 107.1 99 52.5
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.2e-21 107.1 99 52.5
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.2e-21 107.1 99 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.5e-21 106.7 99 47.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.5e-21 106.7 99 51.5
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.5e-21 106.7 99 51.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.5e-21 106.7 104 50.0
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.0e-21 106.3 99 47.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.0e-21 106.3 101 47.5
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.0e-21 106.3 99 51.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.0e-21 106.3 99 49.5
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.0e-21 106.3 101 47.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.6e-21 105.9 99 50.5
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.4e-21 105.5 99 50.5
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.4e-21 105.5 99 49.5
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 4.4e-21 105.1 99 50.5
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 4.4e-21 105.1 99 48.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.4e-21 105.1 101 52.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 5.7e-21 104.8 99 50.5
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 5.7e-21 104.8 101 49.5
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 5.7e-21 104.8 99 50.5
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 5.7e-21 104.8 101 49.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.7e-21 104.8 99 48.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.7e-21 104.8 113 44.2
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.5e-21 104.4 101 46.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 7.5e-21 104.4 99 49.5
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 7.5e-21 104.4 99 49.5
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 9.8e-21 104.0 99 50.5
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 9.8e-21 104.0 99 49.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 9.8e-21 104.0 99 48.5
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 9.8e-21 104.0 99 51.5
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.3e-20 103.6 101 47.5
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.7e-20 103.2 99 50.5
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.7e-20 103.2 99 50.5
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.7e-20 103.2 99 43.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.2e-20 102.8 99 48.5
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 2.2e-20 102.8 101 50.5
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.2e-20 102.8 99 48.5
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.8e-20 102.4 99 47.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.7e-20 102.1 99 47.5
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 4.8e-20 101.7 99 46.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 4.8e-20 101.7 99 48.5
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.8e-20 101.7 99 47.5
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.1e-19 100.5 99 47.5
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.4e-19 100.1 99 46.5
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.8e-19 99.8 99 47.5
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.1e-19 98.6 99 47.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 7.7e-18 94.4 99 48.5
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.3e-17 93.6 99 44.4
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.0e-15 84.3 84 45.2
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.7e-13 78.2 64 56.2
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.0e-10 69.7 86 39.5
Zm00001eb005240 Zea mays HOM05D004544 ORTHO05D443039 1.3e-09 67.0 40 75.0
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.0e-09 65.1 69 43.5
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.1e-08 63.9 47 59.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.5e-08 63.5 72 40.3


User provided reference genes

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