Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.2e-115 419.9 212 100.0
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 3.7e-56 222.2 224 62.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.5e-17 94.0 97 51.5
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 1.3e-16 90.9 218 34.9
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 2.2e-16 90.1 92 48.9
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.1e-15 87.8 92 48.9
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.8e-15 87.0 97 46.4
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.8e-15 87.0 232 34.9
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.8e-15 87.0 92 51.1
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 3.1e-15 86.3 97 49.5
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 4.1e-15 85.9 98 48.0
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 4.1e-15 85.9 89 48.3
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 5.4e-15 85.5 97 47.4
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 7.0e-15 85.1 86 51.2
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 7.0e-15 85.1 88 48.9
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 9.2e-15 84.7 87 50.6
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 9.2e-15 84.7 87 50.6
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 1.6e-14 84.0 96 44.8
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 2.0e-14 83.6 80 52.5
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.5e-14 82.8 219 33.3
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.5e-14 82.4 71 56.3
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.5e-14 82.4 71 56.3
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.5e-14 82.4 71 56.3
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 4.5e-14 82.4 91 48.4
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 5.9e-14 82.0 221 33.9
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 5.9e-14 82.0 95 46.3
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 7.7e-14 81.6 233 33.5
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 7.7e-14 81.6 97 47.4
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 7.7e-14 81.6 82 51.2
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 1.7e-13 80.5 88 47.7
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 1.7e-13 80.5 82 51.2
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 2.9e-13 79.7 246 32.1
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 8.6e-13 78.2 227 33.9
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 1.1e-12 77.8 86 46.5
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 1.5e-12 77.4 224 30.4
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 1.5e-12 77.4 250 31.6
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.9e-12 77.0 89 43.8
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 1.9e-12 77.0 218 33.0
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 2.5e-12 76.6 89 48.3
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.3e-12 76.3 94 43.6
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 4.3e-12 75.9 108 40.7
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 5.6e-12 75.5 81 48.1
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 5.6e-12 75.5 101 43.6
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 7.3e-12 75.1 225 32.9
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 9.5e-12 74.7 79 48.1
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.6e-11 73.9 215 32.6
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.6e-11 73.9 79 46.8
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 2.1e-11 73.6 87 39.1
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.1e-11 73.6 79 45.6
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 2.8e-11 73.2 211 31.3
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 3.6e-11 72.8 80 46.2
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 4.7e-11 72.4 70 50.0
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 6.1e-11 72.0 79 45.6
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 6.1e-11 72.0 79 45.6
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 6.1e-11 72.0 79 46.8
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.8e-10 70.5 72 48.6
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.8e-10 70.5 87 37.9
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 3.0e-10 69.7 92 35.9
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 3.0e-10 69.7 70 48.6
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 4.0e-10 69.3 79 45.6
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 5.2e-10 68.9 81 43.2
Glyma.03G080500 Glycine max HOM05D007028 ORTHO05D003658 6.8e-10 68.6 83 41.0
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 1.5e-09 67.4 72 43.1
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 2.0e-09 67.0 76 47.4
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 2.0e-09 67.0 71 45.1
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 2.6e-09 66.6 78 41.0
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.6e-09 66.6 100 37.0
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 2.6e-09 66.6 72 38.9
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 3.4e-09 66.2 85 40.0
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 3.4e-09 66.2 82 40.2
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 4.4e-09 65.9 78 42.3
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.4e-09 65.9 71 43.7
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 4.4e-09 65.9 69 47.8
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.4e-09 65.9 77 41.6
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 4.4e-09 65.9 71 45.1
Ciclev10023784m.g Citrus clementina HOM05D007028 ORTHO05D003658 5.7e-09 65.5 115 34.8
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 5.7e-09 65.5 105 37.1
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 5.7e-09 65.5 129 32.6
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 5.7e-09 65.5 75 44.0
Manes.12G044800 Manihot esculenta HOM05D007028 ORTHO05D003658 5.7e-09 65.5 90 37.8
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 7.5e-09 65.1 91 36.3
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 7.5e-09 65.1 82 40.2
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 9.8e-09 64.7 124 30.6
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 9.8e-09 64.7 204 32.4
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 9.8e-09 64.7 71 43.7
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.8e-09 64.7 71 43.7
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.8e-09 64.7 71 43.7
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 9.8e-09 64.7 74 41.9
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.3e-08 64.3 89 36.0
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.3e-08 64.3 79 39.2
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 1.3e-08 64.3 78 42.3
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.7e-08 63.9 75 46.7
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 1.7e-08 63.9 70 45.7
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.7e-08 63.9 71 43.7
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 1.7e-08 63.9 70 44.3
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 2.2e-08 63.5 80 41.2
COL.COLO4_04560 Corchorus olitorius HOM05D007028 ORTHO05D003658 2.2e-08 63.5 79 41.8
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 2.2e-08 63.5 76 38.2
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 2.2e-08 63.5 67 43.3
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 2.2e-08 63.5 79 39.2
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 2.9e-08 63.2 77 40.3
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 2.9e-08 63.2 82 39.0
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.9e-08 63.2 71 45.1
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.9e-08 63.2 71 45.1
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.9e-08 63.2 86 37.2
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.9e-08 63.2 71 43.7
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 2.9e-08 63.2 106 34.0
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.9e-08 63.2 67 44.8
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.9e-08 63.2 67 44.8
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.7e-08 62.8 71 43.7
QL09p054524 Quercus lobata HOM05D007028 ORTHO05D003658 3.7e-08 62.8 70 45.7
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 3.7e-08 62.8 71 42.3
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 4.9e-08 62.4 75 38.7
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 4.9e-08 62.4 79 41.8
Gohir.A11G138300 Gossypium hirsutum HOM05D007028 ORTHO05D003658 4.9e-08 62.4 70 47.1
Gorai.007G154400 Gossypium raimondii HOM05D007028 ORTHO05D003658 4.9e-08 62.4 70 47.1
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 4.9e-08 62.4 75 41.3
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 6.4e-08 62.0 84 35.7
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 6.4e-08 62.0 71 39.4
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 6.4e-08 62.0 89 42.7
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 6.4e-08 62.0 71 42.3
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 8.3e-08 61.6 84 35.7
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 8.3e-08 61.6 85 36.5
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 8.3e-08 61.6 71 43.7
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 8.3e-08 61.6 91 37.4
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 8.3e-08 61.6 71 42.3
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 8.3e-08 61.6 75 40.0
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 8.3e-08 61.6 71 39.4
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 1.1e-07 61.2 79 34.2
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.1e-07 61.2 74 41.9
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.1e-07 61.2 88 38.6
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.1e-07 61.2 88 38.6
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 1.1e-07 61.2 92 38.0
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 1.1e-07 61.2 85 35.3
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 1.4e-07 60.8 88 37.5
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.4e-07 60.8 71 42.3
Gohir.D11G144200 Gossypium hirsutum HOM05D007028 ORTHO05D003658 1.4e-07 60.8 70 45.7
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.4e-07 60.8 74 39.2
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.4e-07 60.8 74 39.2
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.8e-07 60.5 71 40.8
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.8e-07 60.5 100 33.0
Potri.002G242400 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.8e-07 60.5 83 37.3
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 2.4e-07 60.1 73 39.7
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 2.4e-07 60.1 75 40.0
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 2.4e-07 60.1 74 37.8
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.4e-07 60.1 71 36.6
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 3.2e-07 59.7 193 25.4
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 3.2e-07 59.7 193 25.4
Thecc.01G225600 Theobroma cacao HOM05D007028 ORTHO05D003658 3.2e-07 59.7 70 42.9
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 3.2e-07 59.7 80 38.8
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 4.1e-07 59.3 70 44.3
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.1e-07 59.3 88 36.4
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.1e-07 59.3 83 42.2
MD10G1164400 Malus domestica HOM05D007028 ORTHO05D003658 4.1e-07 59.3 81 39.5
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 5.4e-07 58.9 75 38.7
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 5.4e-07 58.9 70 40.0
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 5.4e-07 58.9 72 34.7
Manes.08G105400 Manihot esculenta HOM05D007028 ORTHO05D003658 5.4e-07 58.9 100 37.0
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 7.0e-07 58.5 81 45.7
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 7.0e-07 58.5 203 30.5
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 7.0e-07 58.5 75 37.3
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 7.0e-07 58.5 71 39.4
Actinidia18232 Actinidia chinensis HOM05D007028 ORTHO05D003658 9.2e-07 58.2 82 39.0
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 9.2e-07 58.2 199 28.1
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.2e-06 57.8 88 35.2
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.6e-06 57.4 81 37.0
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.6e-06 57.4 71 36.6
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.6e-06 57.4 71 38.0
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 1.6e-06 57.4 71 38.0
Actinidia37594 Actinidia chinensis HOM05D007028 ORTHO05D003658 2.0e-06 57.0 62 43.5
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 2.0e-06 57.0 71 38.0
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.7e-06 56.6 202 26.7
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 2.7e-06 56.6 202 26.7
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.5e-06 56.2 74 39.2
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 3.5e-06 56.2 210 30.0
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 3.5e-06 56.2 216 26.9
MD05G1175300 Malus domestica HOM05D007028 ORTHO05D003658 3.5e-06 56.2 100 33.0
Medtr7g057900 Medicago truncatula HOM05D007028 ORTHO05D003658 3.5e-06 56.2 82 35.4
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 4.6e-06 55.8 106 32.1


User provided reference genes

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