Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 0.0e+00 1535.0 817 100.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 0.0e+00 1162.9 798 76.8
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 4.6e-227 792.0 808 56.2
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.0e-221 774.2 820 54.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.8e-221 772.3 823 54.8
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.0e-218 764.2 810 53.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.0e-218 764.2 810 54.8
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.4e-218 763.8 824 52.7
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 6.7e-218 761.5 825 52.7
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 2.6e-217 759.6 803 53.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 4.4e-217 758.8 804 53.7
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 4.4e-217 758.8 802 53.7
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.3e-216 757.3 800 54.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.2e-216 756.5 816 53.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 3.1e-215 752.7 803 53.8
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 4.1e-215 752.3 807 54.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 4.1e-215 752.3 817 54.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 9.1e-215 751.1 831 53.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.0e-214 750.0 808 53.6
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 5.9e-214 748.4 800 53.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 5.9e-214 748.4 800 53.8
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 5.9e-214 748.4 799 54.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.9e-213 746.1 802 53.5
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.2e-211 740.7 822 52.6
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.1e-211 740.0 826 54.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.7e-211 739.6 813 54.2
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 8.0e-211 738.0 800 53.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.0e-210 737.6 806 52.0
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.4e-210 737.3 822 52.2
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.8e-210 736.9 808 52.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.7e-210 734.9 812 53.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.1e-209 734.2 801 51.6
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.5e-209 733.8 812 53.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.0e-209 733.4 812 51.7
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.6e-209 733.0 825 52.2
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.3e-208 728.4 809 52.4
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 8.2e-208 728.0 822 51.6
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.1e-207 727.6 800 52.0
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.1e-207 727.6 811 52.0
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.8e-207 726.9 806 51.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.1e-207 726.1 813 51.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 9.1e-207 724.5 814 51.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.0e-205 721.1 811 50.7
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.2e-205 719.9 805 51.9
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.8e-205 719.2 809 52.2
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 8.5e-205 718.0 811 51.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.5e-204 717.2 803 51.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.5e-204 716.5 808 52.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 4.2e-204 715.7 816 53.1
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 4.7e-203 712.2 811 50.7
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.4e-202 710.7 803 50.8
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.7e-202 708.4 817 50.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 8.8e-202 708.0 804 50.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.5e-201 707.2 807 51.9
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.0e-201 706.8 810 52.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.6e-201 706.4 817 50.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 4.4e-201 705.7 798 51.1
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-200 704.1 812 52.7
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.2e-200 703.4 809 50.7
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.8e-200 703.0 810 50.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 3.7e-200 702.6 806 51.1
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 4.8e-200 702.2 815 51.4
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 6.3e-200 701.8 812 51.1
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.4e-199 700.7 819 50.5
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.4e-199 699.9 779 51.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.1e-199 699.5 821 50.4
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-199 699.5 803 50.1
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 4.5e-198 695.7 810 50.7
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 7.7e-198 694.9 821 50.7
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.5e-196 688.7 802 50.4
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.1e-195 686.8 813 49.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.7e-195 685.6 816 51.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 4.0e-194 682.6 828 48.2
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.2e-193 681.0 826 48.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-193 681.0 811 48.3
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.0e-193 680.2 798 49.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.6e-193 679.9 799 49.3
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 2.6e-193 679.9 828 48.7
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.3e-192 674.9 818 51.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.1e-191 672.9 795 49.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.1e-191 672.9 795 49.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.6e-190 670.6 793 50.2
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.5e-190 669.5 807 49.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.5e-190 669.5 807 49.8
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.5e-190 669.5 795 48.3
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 4.5e-190 669.1 799 49.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.8e-189 666.0 805 48.8
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 6.3e-184 648.7 843 47.2
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 4.5e-182 642.5 798 48.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.3e-181 641.0 814 46.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 9.8e-177 624.8 687 51.2
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.1e-175 621.3 806 47.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 5.4e-175 619.0 805 47.3
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.3e-173 613.6 817 45.5
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.6e-171 607.4 898 43.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 8.9e-170 601.7 801 45.7
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.7e-168 597.4 596 54.4
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.2e-167 593.2 656 51.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.4e-159 567.8 806 43.7
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.5e-153 547.7 807 44.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-148 531.2 561 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 3.6e-139 500.0 839 38.5
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 6.9e-130 469.2 581 48.5
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.3e-120 438.3 787 37.1
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 2.2e-120 437.6 454 54.4
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.9e-120 437.2 584 45.5
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 6.5e-120 436.0 857 35.1
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.1e-118 431.0 812 37.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.0e-101 374.0 672 35.7
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 3.3e-100 370.5 369 55.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-92 345.5 426 46.5
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.8e-91 340.9 304 57.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-85 322.4 370 51.6
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.0e-85 320.5 461 42.7
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-80 305.1 289 56.1
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 4.5e-73 280.4 440 40.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.0e-72 279.3 430 42.8
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-68 265.8 331 45.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.0e-68 265.0 227 62.6
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-63 249.2 200 62.0
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.2e-61 240.4 909 27.0
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-57 229.2 231 56.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-56 226.1 230 54.8
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.0e-52 211.8 305 44.9
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 6.2e-46 190.3 147 66.0
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 8.9e-45 186.4 198 54.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.0e-40 171.4 262 45.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 8.6e-40 169.9 208 46.2
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 4.3e-39 167.5 248 46.0
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.4e-34 150.6 153 51.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.2e-30 137.1 187 44.4
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.4e-28 131.3 665 24.1
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.4e-27 126.7 176 41.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.1e-26 126.3 542 25.3
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 3.9e-24 117.9 71 69.0
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.5e-23 115.9 172 44.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 4.3e-23 114.4 700 24.4
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.8e-22 111.7 211 37.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 8.1e-22 110.2 150 44.0
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 6.4e-19 100.5 105 48.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 8.4e-19 100.1 153 45.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 7.1e-18 97.1 93 53.8
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-16 92.8 155 42.6
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 4.3e-15 87.8 212 36.3
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.9e-11 75.1 61 54.1
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.5e-11 73.9 76 48.7
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.9e-10 72.4 70 54.3
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 7.1e-10 70.5 103 41.7
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.9e-08 64.7 126 36.5
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.1e-07 63.2 107 42.1
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.6e-07 60.1 87 43.7
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 3.7e-06 58.2 180 32.8


User provided reference genes

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