Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0497500 Oryza sativa ssp. japonica HOM05D002218 ORTHO05D296489 2.8e-175 619.0 444 100.0
Zm00001eb382060 Zea mays HOM05D002218 ORTHO05D030379 8.3e-18 95.9 115 54.8
Zm00001eb188690 Zea mays HOM05D002218 ORTHO05D030379 3.1e-12 77.4 105 44.8
Os02g0710700 Oryza sativa ssp. japonica HOM05D002218 ORTHO05D030379 1.2e-11 75.5 100 47.0
Zm00001eb252390 Zea mays HOM05D002218 ORTHO05D030379 3.2e-09 67.4 103 45.6
SGA_v2.0_scaffold168G38495 Striga asiatica HOM05D002218 ORTHO05D002332 1.6e-08 65.1 67 49.3
CiPaw.15G140100 Carya illinoinensis HOM05D002218 ORTHO05D002332 2.1e-08 64.7 117 37.6
Eucgr.B00868 Eucalyptus grandis HOM05D002218 ORTHO05D002332 3.5e-08 63.9 64 48.4
Cc04_g06540 Coffea canephora HOM05D002218 ORTHO05D002332 7.8e-08 62.8 101 41.6
Hma1.2p1_0669F.1_g200250 Hydrangea macrophylla HOM05D002218 ORTHO05D002332 1.0e-07 62.4 101 41.6
Hund02330 Selenicereus undatus HOM05D002218 ORTHO05D002332 1.3e-07 62.0 120 38.3
Duzib205G0513 Durio zibethinus HOM05D002218 ORTHO05D002332 1.7e-07 61.6 91 42.9
FAN13G0503 Fragaria x ananassa HOM05D002218 ORTHO05D002332 1.7e-07 61.6 89 40.4
Nitab4.5_0003221g0020 Nicotiana tabacum HOM05D002218 ORTHO05D002332 1.7e-07 61.6 60 53.3
Peaxi162Scf00207g00032 Petunia axillaris HOM05D002218 ORTHO05D002332 1.7e-07 61.6 72 45.8
FAN04G1032 Fragaria x ananassa HOM05D002218 ORTHO05D002332 2.3e-07 61.2 89 40.4
MSTRG.4563 Avicennia marina HOM05D002218 ORTHO05D002332 3.0e-07 60.8 73 43.8
Nitab4.5_0004037g0040 Nicotiana tabacum HOM05D002218 ORTHO05D002332 3.0e-07 60.8 65 49.2
ECA233G4566 Erigeron canadensis HOM05D002218 ORTHO05D002332 5.1e-07 60.1 65 47.7
Migut.D01572 Erythranthe guttata HOM05D002218 ORTHO05D002332 5.1e-07 60.1 100 38.0
Os03g0656075 Oryza sativa ssp. japonica HOM05D035805 ORTHO05D300747 5.1e-07 60.1 53 67.9
Ah.06g193610 Amaranthus hybridus HOM05D002218 ORTHO05D002332 6.6e-07 59.7 94 42.6
CSS0023604 Camellia sinensis var. sinensis HOM05D002218 ORTHO05D002332 6.6e-07 59.7 65 49.2
RcHm_v2.0_Chr7g0178651 Rosa chinensis HOM05D002218 ORTHO05D002332 6.6e-07 59.7 89 39.3
SalBow1G7832 Salvia bowleyana HOM05D002218 ORTHO05D002332 6.6e-07 59.7 65 47.7
TWI60G1189 Tripterygium wilfordii HOM05D002218 ORTHO05D002332 6.6e-07 59.7 66 45.5
FAN08G0638 Fragaria x ananassa HOM05D002218 ORTHO05D002332 8.6e-07 59.3 89 39.3
Actinidia09080 Actinidia chinensis HOM05D002218 ORTHO05D002332 1.1e-06 58.9 65 44.6
Aqoxy3G00122 Aquilegia oxysepala HOM05D002218 ORTHO05D002332 1.1e-06 58.9 67 47.8
CAN.G423.21 Capsicum annuum HOM05D002218 ORTHO05D002332 1.1e-06 58.9 97 37.1
AUR62033736 Chenopodium quinoa HOM05D002218 ORTHO05D002332 1.1e-06 58.9 86 41.9
Dinv10190 Davidia involucrata HOM05D002218 ORTHO05D002332 1.1e-06 58.9 111 36.0
FAN18G0924 Fragaria x ananassa HOM05D002218 ORTHO05D002332 1.1e-06 58.9 89 39.3
Sabra12G0034400 Salix brachista HOM05D002218 ORTHO05D002332 1.1e-06 58.9 81 44.4
Sopen03g038000 Solanum pennellii HOM05D002218 ORTHO05D002332 1.1e-06 58.9 65 47.7
PGSC0003DMG400005653 Solanum tuberosum HOM05D002218 ORTHO05D002332 1.1e-06 58.9 65 47.7
TWI15G1170 Tripterygium wilfordii HOM05D002218 ORTHO05D002332 1.1e-06 58.9 98 39.8
ClCG06G014430 Citrullus lanatus HOM05D002218 ORTHO05D002332 1.5e-06 58.5 65 46.2
Dinv10271 Davidia involucrata HOM05D002218 ORTHO05D002332 1.5e-06 58.5 121 36.4
Lj5C155T4 Lonicera japonica HOM05D002218 ORTHO05D002332 1.5e-06 58.5 87 41.4
Potri.012G049000 Populus trichocarpa HOM05D002218 ORTHO05D002332 1.5e-06 58.5 65 50.8
Prupe.5G231000 Prunus persica HOM05D002218 ORTHO05D002332 1.5e-06 58.5 74 41.9
MBI10_g08555_MAGBIO Magnolia biondii HOM05D002218 ORTHO05D002332 1.9e-06 58.2 81 38.3
CARHR093370 Cardamine hirsuta HOM05D002218 ORTHO05D002332 2.5e-06 57.8 66 48.5
Lj4g0023394 Lotus japonicus HOM05D002218 ORTHO05D002332 2.5e-06 57.8 79 41.8
MD14G1234700 Malus domestica HOM05D002218 ORTHO05D002332 2.5e-06 57.8 95 37.9
Manes.06G008100 Manihot esculenta HOM05D002218 ORTHO05D002332 2.5e-06 57.8 84 42.9
Nitab4.5_0001644g0110 Nicotiana tabacum HOM05D002218 ORTHO05D002332 2.5e-06 57.8 93 40.9
Solyc03g119110.4 Solanum lycopersicum HOM05D002218 ORTHO05D002332 2.5e-06 57.8 65 46.2
Solyc06g069000.3 Solanum lycopersicum HOM05D002218 ORTHO05D002332 2.5e-06 57.8 63 47.6
Sopen06g026290 Solanum pennellii HOM05D002218 ORTHO05D002332 2.5e-06 57.8 63 47.6
PGSC0003DMG401028796 Solanum tuberosum HOM05D002218 ORTHO05D002332 2.5e-06 57.8 63 47.6
CAN.G1129.22 Capsicum annuum HOM05D002218 ORTHO05D002332 3.3e-06 57.4 65 46.2
AUR62042377 Chenopodium quinoa HOM05D002218 ORTHO05D002332 3.3e-06 57.4 66 45.5
Ciclev10008811m.g Citrus clementina HOM05D002218 ORTHO05D002332 3.3e-06 57.4 65 47.7
Thhalv10021078m.g Eutrema salsugineum HOM05D002218 ORTHO05D002332 3.3e-06 57.4 67 44.8
Glyma.09G178200 Glycine max HOM05D002218 ORTHO05D002332 3.3e-06 57.4 112 37.5
HanXRQChr08g0227241 Helianthus annuus HOM05D002218 ORTHO05D002332 3.3e-06 57.4 61 47.5
Nitab4.5_0001986g0130 Nicotiana tabacum HOM05D002218 ORTHO05D002332 3.3e-06 57.4 65 47.7
Sabra15G0056500 Salix brachista HOM05D002218 ORTHO05D002332 3.3e-06 57.4 87 40.2
Aa31LG8G4910 Aethionema arabicum HOM05D002218 ORTHO05D002332 4.3e-06 57.0 67 44.8
MSTRG.9291 Avicennia marina HOM05D002218 ORTHO05D002332 4.3e-06 57.0 68 45.6
CANSAT80G1338 Cannabis sativa HOM05D002218 ORTHO05D002332 4.3e-06 57.0 70 42.9
DCAR_014727 Daucus carota HOM05D002218 ORTHO05D002332 4.3e-06 57.0 82 40.2
Peaxi162Scf00683g00016 Petunia axillaris HOM05D002218 ORTHO05D002332 4.3e-06 57.0 65 47.7
Potri.015G040900 Populus trichocarpa HOM05D002218 ORTHO05D002332 4.3e-06 57.0 87 41.4
TAR371G0208 Trochodendron aralioides HOM05D002218 ORTHO05D002332 4.3e-06 57.0 87 39.1
GSVIVG01008405001 Vitis vinifera HOM05D002218 ORTHO05D002332 4.3e-06 57.0 84 40.5
BcaB04g18979 Brassica carinata HOM05D002218 ORTHO05D002332 5.6e-06 56.6 67 43.3
CiPaw.16G091500 Carya illinoinensis HOM05D002218 ORTHO05D002332 5.6e-06 56.6 101 37.6
CsaV3_1G004230 Cucumis sativus L. HOM05D002218 ORTHO05D002332 5.6e-06 56.6 65 43.1
Phvul.004G151900 Phaseolus vulgaris HOM05D002218 ORTHO05D002332 5.6e-06 56.6 110 37.3
TAR629G3245 Trochodendron aralioides HOM05D002218 ORTHO05D002332 5.6e-06 56.6 94 42.6
HPP92_008285 Vanilla planifolia HOM05D002218 ORTHO05D002332 5.6e-06 56.6 98 36.7
CANSAT80G0893 Cannabis sativa HOM05D002218 ORTHO05D002332 7.3e-06 56.2 89 38.2
Carub.0003s1777 Capsella rubella HOM05D002218 ORTHO05D002332 7.3e-06 56.2 67 44.8
Haze_18805 Corylus avellana HOM05D002218 ORTHO05D002332 7.3e-06 56.2 87 40.2
Psat1g032840 Pisum sativum HOM05D002218 ORTHO05D002332 7.3e-06 56.2 59 49.2
Sed0006313 Sechium edule HOM05D002218 ORTHO05D002332 7.3e-06 56.2 95 37.9
Sc10g0009300 Simmondsia chinensis HOM05D002218 ORTHO05D002332 7.3e-06 56.2 96 39.6
MD06G1230000 Malus domestica HOM05D002218 ORTHO05D002332 9.5e-06 55.8 89 38.2
Medtr0110s0010 Medicago truncatula HOM05D002218 ORTHO05D002332 9.5e-06 55.8 93 38.7
Sabra15G0064400 Salix brachista HOM05D002218 ORTHO05D002332 9.5e-06 55.8 81 42.0
THA.LOC104820356 Tarenaya hassleriana HOM05D002218 ORTHO05D002332 9.5e-06 55.8 95 33.7


User provided reference genes

Program Settings