Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 5.1e-271 937.2 458 100.0
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 9.9e-190 667.2 434 77.6
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.4e-103 380.9 429 52.7
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 5.6e-92 342.4 403 51.6
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 7.3e-92 342.0 479 43.4
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 3.6e-91 339.7 474 46.6
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 6.8e-90 335.5 520 43.7
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 8.9e-90 335.1 442 48.2
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.2e-89 334.7 469 45.4
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 2.0e-89 334.0 381 51.4
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.6e-89 333.6 407 49.1
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 5.8e-89 332.4 412 49.3
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 7.6e-89 332.0 490 45.3
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 9.9e-89 331.6 411 49.4
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.7e-88 330.9 480 46.2
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 1.7e-88 330.9 410 49.5
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 2.9e-88 330.1 400 47.5
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.9e-88 330.1 454 46.0
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.8e-88 329.7 461 46.9
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 3.8e-88 329.7 446 47.1
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 8.4e-88 328.6 483 44.7
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.2e-87 326.6 410 47.6
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 3.2e-87 326.6 471 45.2
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.2e-87 326.6 488 44.3
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.2e-87 326.6 373 50.9
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 5.4e-87 325.9 411 47.9
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 5.4e-87 325.9 475 44.6
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 7.1e-87 325.5 388 50.5
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.2e-86 324.7 393 48.6
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 3.5e-86 323.2 481 45.1
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 4.6e-86 322.8 430 47.0
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 4.6e-86 322.8 515 42.5
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 4.6e-86 322.8 474 45.1
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 7.8e-86 322.0 448 46.9
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 3.0e-85 320.1 440 46.1
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 5.1e-85 319.3 463 44.9
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 5.1e-85 319.3 463 45.6
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 5.1e-85 319.3 463 45.6
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.1e-84 318.2 451 45.7
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.5e-84 317.8 453 45.3
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.9e-84 317.4 507 41.2
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.9e-84 317.4 424 45.8
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.3e-84 316.6 478 43.1
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 4.3e-84 316.2 465 45.6
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 5.6e-84 315.8 405 48.9
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 9.6e-84 315.1 392 50.5
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.6e-83 314.3 456 46.1
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.6e-83 313.2 449 45.4
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 4.7e-83 312.8 424 45.3
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 6.2e-83 312.4 405 48.4
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 6.2e-83 312.4 519 43.9
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 8.1e-83 312.0 402 48.8
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 1.8e-82 310.8 421 47.3
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.4e-82 310.5 303 55.1
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 4.0e-82 309.7 479 43.6
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 6.9e-82 308.9 434 44.9
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 1.5e-81 307.8 498 43.4
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 3.4e-81 306.6 479 44.9
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 4.4e-81 306.2 325 53.2
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 5.8e-81 305.8 488 43.4
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 5.8e-81 305.8 495 43.4
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 9.9e-81 305.1 385 48.6
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.7e-80 304.3 468 44.4
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.9e-80 303.5 425 43.5
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 3.8e-80 303.1 371 49.1
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 6.4e-80 302.4 478 42.3
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 8.4e-80 302.0 425 46.4
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.4e-79 300.4 409 46.5
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.4e-79 300.4 434 43.5
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 4.2e-79 299.7 435 45.7
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 7.1e-79 298.9 437 45.8
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 7.1e-79 298.9 430 44.2
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 7.1e-79 298.9 493 42.0
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 7.1e-79 298.9 454 42.3
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.6e-78 297.7 443 44.0
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 2.1e-78 297.4 429 44.3
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 6.0e-78 295.8 381 46.2
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.0e-77 295.0 331 52.3
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.3e-77 294.7 397 46.9
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.3e-77 293.9 466 43.6
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 3.9e-77 293.1 379 47.0
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 5.1e-77 292.7 418 45.2
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 5.1e-77 292.7 361 48.2
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 6.6e-77 292.4 451 41.0
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.5e-76 291.2 432 42.8
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.5e-76 291.2 432 42.1
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 1.5e-76 291.2 420 44.3
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.5e-76 291.2 470 42.6
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.9e-76 290.8 469 41.8
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 1.9e-76 290.8 454 42.7
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 2.5e-76 290.4 414 44.7
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.5e-76 290.4 409 45.2
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.3e-76 290.0 542 39.3
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 5.6e-76 289.3 435 41.4
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 5.6e-76 289.3 421 43.9
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 7.3e-76 288.9 424 45.3
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 4.8e-75 286.2 368 45.9
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 4.8e-75 286.2 435 41.4
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 4.8e-75 286.2 418 43.5
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 4.8e-75 286.2 368 45.9
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 8.1e-75 285.4 441 42.0
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.4e-74 284.6 380 45.3
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 6.9e-74 282.3 437 43.0
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 6.9e-74 282.3 364 47.3
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 9.0e-74 282.0 418 43.8
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.5e-73 281.2 444 40.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.5e-73 281.2 352 50.6
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.5e-73 281.2 387 45.7
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 3.4e-73 280.0 417 43.6
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 3.4e-73 280.0 417 43.6
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.7e-72 277.7 484 40.3
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 6.4e-72 275.8 355 46.5
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.4e-71 274.6 331 48.0
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.2e-71 273.5 375 45.9
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 9.3e-71 271.9 465 41.1
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 2.1e-70 270.8 393 45.0
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.9e-69 266.5 384 45.6
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 7.4e-68 262.3 458 40.8
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.0e-65 254.2 334 46.7
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.9e-64 249.6 381 43.6
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 9.3e-63 245.4 445 37.8
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.6e-62 244.6 403 39.7
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 7.9e-62 242.3 392 41.6
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.5e-60 238.0 379 40.1
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.1e-58 231.9 265 50.2
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 6.9e-58 229.2 402 36.8
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 5.8e-57 226.1 283 47.3
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.3e-56 224.9 324 44.1
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.9e-55 221.1 484 35.1
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 9.7e-52 208.8 275 48.0
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.3e-50 203.0 282 43.3
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.9e-50 202.6 278 45.3
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.2e-48 197.6 293 42.0
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 7.2e-47 192.6 362 35.9
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 7.9e-46 189.1 215 50.2
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 2.6e-41 174.1 152 59.9
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 5.0e-40 169.9 163 58.3
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 3.7e-35 153.7 400 32.0
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 4.4e-28 130.2 203 42.4
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 1.7e-27 128.3 460 28.9
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 1.8e-26 124.8 200 39.5
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 1.8e-21 108.2 167 45.5
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 6.7e-21 106.3 415 27.7
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.5e-20 105.1 189 42.9
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.4e-20 103.6 213 33.8
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.8e-18 98.2 425 27.8
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 4.7e-14 83.6 134 41.0
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 5.2e-13 80.1 141 43.3
CDE03G0290 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 3.8e-08 63.9 146 32.9


User provided reference genes

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