Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0492700 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D004254 1.1e-74 283.1 139 100.0
Os01g0256400 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D004254 3.7e-25 118.6 62 90.3
Zm00001eb127760 Zea mays HOM05D000536 ORTHO05D004254 6.0e-23 111.3 96 65.6
Zm00001eb333540 Zea mays HOM05D000536 ORTHO05D004254 1.9e-21 106.3 91 64.8
Cpa.g.sc16.198 Carica papaya HOM05D000536 ORTHO05D004254 2.2e-17 92.8 75 60.0
Oeu063361.1 Olea europaea HOM05D000536 ORTHO05D004254 2.4e-16 89.4 64 62.5
MD13G1166300 Malus domestica HOM05D000536 ORTHO05D004254 4.2e-16 88.6 62 66.1
Cc03_g01640 Coffea canephora HOM05D000536 ORTHO05D004254 5.4e-16 88.2 68 63.2
Gohir.D02G055300 Gossypium hirsutum HOM05D000536 ORTHO05D004254 5.4e-16 88.2 96 54.2
Gorai.005G061200 Gossypium raimondii HOM05D000536 ORTHO05D004254 5.4e-16 88.2 96 54.2
Hma1.2p1_0804F.1_g220960 Hydrangea macrophylla HOM05D000536 ORTHO05D004254 5.4e-16 88.2 83 56.6
TAR636G1218 Trochodendron aralioides HOM05D000536 ORTHO05D004254 5.4e-16 88.2 62 66.1
PSO832G2216 Papaver somniferum HOM05D000536 ORTHO05D004254 9.3e-16 87.4 59 67.8
DCAR_002475 Daucus carota HOM05D000536 ORTHO05D004254 1.2e-15 87.0 66 60.6
Gohir.A02G050200 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.2e-15 87.0 96 53.1
MD16G1166100 Malus domestica HOM05D000536 ORTHO05D004254 1.2e-15 87.0 61 65.6
Potri.008G219900 Populus trichocarpa HOM05D000536 ORTHO05D004254 1.2e-15 87.0 73 58.9
Actinidia19580 Actinidia chinensis HOM05D000536 ORTHO05D004254 1.6e-15 86.7 65 63.1
CARHR290480 Cardamine hirsuta HOM05D000536 ORTHO05D004254 1.6e-15 86.7 72 62.5
PGR031G2502 Punica granatum HOM05D000536 ORTHO05D004254 1.6e-15 86.7 83 56.6
Thhalv10026570m.g Eutrema salsugineum HOM05D000536 ORTHO05D004254 2.1e-15 86.3 85 56.5
PSO210G1242 Papaver somniferum HOM05D000536 ORTHO05D004254 2.1e-15 86.3 59 66.1
TAR633G2035 Trochodendron aralioides HOM05D000536 ORTHO05D004254 2.1e-15 86.3 58 67.2
Aa31LG10G6210 Aethionema arabicum HOM05D000536 ORTHO05D004254 2.7e-15 85.9 88 55.7
Gohir.D10G171900 Gossypium hirsutum HOM05D000536 ORTHO05D004254 2.7e-15 85.9 71 62.0
Gorai.011G192000 Gossypium raimondii HOM05D000536 ORTHO05D004254 2.7e-15 85.9 71 62.0
Actinidia40293 Actinidia chinensis HOM05D000536 ORTHO05D004254 3.5e-15 85.5 66 62.1
DCAR_023293 Daucus carota HOM05D000536 ORTHO05D004254 3.5e-15 85.5 80 52.5
Duzib212G0170 Durio zibethinus HOM05D000536 ORTHO05D004254 3.5e-15 85.5 73 57.5
Sabra08G0151900 Salix brachista HOM05D000536 ORTHO05D004254 3.5e-15 85.5 61 63.9
arahy.Tifrunner.gnm1.ann1.4W0AQG Arachis hypogaea HOM05D000536 ORTHO05D004254 4.6e-15 85.1 77 59.7
ClCG05G006200 Citrullus lanatus HOM05D000536 ORTHO05D004254 4.6e-15 85.1 58 69.0
COL.COLO4_13830 Corchorus olitorius HOM05D000536 ORTHO05D004254 4.6e-15 85.1 94 52.1
Gohir.A01G177650 Gossypium hirsutum HOM05D000536 ORTHO05D004254 4.6e-15 85.1 98 51.0
PSO170G5413 Papaver somniferum HOM05D000536 ORTHO05D004254 4.6e-15 85.1 56 69.6
Prupe.1G132800 Prunus persica HOM05D000536 ORTHO05D004254 4.6e-15 85.1 84 54.8
VMungo1309G0043 Vigna mungo HOM05D000536 ORTHO05D004254 4.6e-15 85.1 89 52.8
CDE02G3548 Ceratophyllum demersum HOM05D000536 ORTHO05D004254 6.0e-15 84.7 79 53.2
Gohir.A10G127085 Gossypium hirsutum HOM05D000536 ORTHO05D004254 6.0e-15 84.7 71 60.6
Sed0023001 Sechium edule HOM05D000536 ORTHO05D004254 6.0e-15 84.7 67 64.2
HPP92_002151 Vanilla planifolia HOM05D000536 ORTHO05D004254 6.0e-15 84.7 62 62.9
BcaC06g32975 Brassica carinata HOM05D000536 ORTHO05D004254 7.8e-15 84.3 81 56.8
BcaC06g33435 Brassica carinata HOM05D000536 ORTHO05D004254 7.8e-15 84.3 81 56.8
BolC7t45279H Brassica oleracea HOM05D000536 ORTHO05D004254 7.8e-15 84.3 81 56.8
CSS0049917 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D004254 7.8e-15 84.3 68 58.8
Ciclev10007063m.g Citrus clementina HOM05D000536 ORTHO05D004254 7.8e-15 84.3 62 62.9
Gohir.A10G165700 Gossypium hirsutum HOM05D000536 ORTHO05D004254 7.8e-15 84.3 71 60.6
Psat4g025240 Pisum sativum HOM05D000536 ORTHO05D004254 7.8e-15 84.3 80 57.5
HPP92_013727 Vanilla planifolia HOM05D000536 ORTHO05D004254 7.8e-15 84.3 59 67.8
MELO3C006677.2 Cucumis melo HOM05D000536 ORTHO05D004254 1.0e-14 84.0 87 58.6
Gohir.D04G095600 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.0e-14 84.0 71 60.6
PSO407G0346 Papaver somniferum HOM05D000536 ORTHO05D004254 1.0e-14 84.0 56 67.9
Sed0020505 Sechium edule HOM05D000536 ORTHO05D004254 1.0e-14 84.0 61 65.6
AL7G39340 Arabidopsis lyrata HOM05D000536 ORTHO05D004254 1.3e-14 83.6 85 55.3
MSTRG.10107 Avicennia marina HOM05D000536 ORTHO05D004254 1.3e-14 83.6 59 66.1
Carub.0007s2573 Capsella rubella HOM05D000536 ORTHO05D004254 1.3e-14 83.6 85 55.3
TAR365G0508 Trochodendron aralioides HOM05D000536 ORTHO05D004254 1.3e-14 83.6 65 61.5
unitig_32.g10640 Utricularia gibba HOM05D000536 ORTHO05D004254 1.3e-14 83.6 90 52.2
Aqoxy5G00774 Aquilegia oxysepala HOM05D000536 ORTHO05D004254 1.7e-14 83.2 59 66.1
C07p47520 Brassica napus HOM05D000536 ORTHO05D004254 1.7e-14 83.2 71 59.2
Gohir.A09G213150 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.7e-14 83.2 59 64.4
Medtr4g120150 Medicago truncatula HOM05D000536 ORTHO05D004254 1.7e-14 83.2 68 61.8
ClCG06G005020 Citrullus lanatus HOM05D000536 ORTHO05D004254 2.3e-14 82.8 67 61.2
Glyma.15G150000 Glycine max HOM05D000536 ORTHO05D004254 2.3e-14 82.8 70 58.6
Gohir.A12G082966 Gossypium hirsutum HOM05D000536 ORTHO05D004254 2.3e-14 82.8 59 64.4
TPR.G3203 Trifolium pratense HOM05D000536 ORTHO05D004254 2.3e-14 82.8 66 62.1
MELO3C021317.2 Cucumis melo HOM05D000536 ORTHO05D004254 3.0e-14 82.4 67 61.2
CsaV3_3G014810 Cucumis sativus L. HOM05D000536 ORTHO05D004254 3.0e-14 82.4 85 57.6
Thecc.04G287700 Theobroma cacao HOM05D000536 ORTHO05D004254 3.0e-14 82.4 95 50.5
CSS0023906 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D004254 3.9e-14 82.0 67 58.2
CiPaw.01G146200 Carya illinoinensis HOM05D000536 ORTHO05D004254 3.9e-14 82.0 74 56.8
Glyma.09G043000 Glycine max HOM05D000536 ORTHO05D004254 3.9e-14 82.0 81 54.3
CANSAT78G2174 Cannabis sativa HOM05D000536 ORTHO05D004254 5.1e-14 81.6 82 53.7
HanXRQChr03g0089501 Helianthus annuus HOM05D000536 ORTHO05D004254 5.1e-14 81.6 59 66.1
Hma1.2p1_0078F.1_g040390 Hydrangea macrophylla HOM05D000536 ORTHO05D004254 5.1e-14 81.6 78 53.8
Sed0005753 Sechium edule HOM05D000536 ORTHO05D004254 5.1e-14 81.6 69 60.9
PGSC0003DMG400011331 Solanum tuberosum HOM05D000536 ORTHO05D004254 5.1e-14 81.6 83 53.0
Ah.13g074860 Amaranthus hybridus HOM05D000536 ORTHO05D004254 6.6e-14 81.3 67 58.2
AT4G15930 Arabidopsis thaliana HOM05D000536 ORTHO05D004254 6.6e-14 81.3 85 54.1
BcaB04g18343 Brassica carinata HOM05D000536 ORTHO05D004254 6.6e-14 81.3 85 54.1
BcaC07g37939 Brassica carinata HOM05D000536 ORTHO05D004254 6.6e-14 81.3 56 69.6
A08p12060 Brassica napus HOM05D000536 ORTHO05D004254 6.6e-14 81.3 56 69.6
BolC8t48323H Brassica oleracea HOM05D000536 ORTHO05D004254 6.6e-14 81.3 56 69.6
Dinv44359 Davidia involucrata HOM05D000536 ORTHO05D004254 6.6e-14 81.3 51 70.6
Manes.03G197600 Manihot esculenta HOM05D000536 ORTHO05D004254 6.6e-14 81.3 78 52.6
Manes.03G197700 Manihot esculenta HOM05D000536 ORTHO05D004254 6.6e-14 81.3 77 51.9
Sed0015469 Sechium edule HOM05D000536 ORTHO05D004254 6.6e-14 81.3 61 62.3
CsaV3_6G023900 Cucumis sativus L. HOM05D000536 ORTHO05D004254 8.7e-14 80.9 67 59.7
Duzib151G0729 Durio zibethinus HOM05D000536 ORTHO05D004254 8.7e-14 80.9 95 49.5
Phvul.009G249800 Phaseolus vulgaris HOM05D000536 ORTHO05D004254 8.7e-14 80.9 84 53.6
Phvul.009G249900 Phaseolus vulgaris HOM05D000536 ORTHO05D004254 8.7e-14 80.9 83 54.2
BraA03t14048Z Brassica rapa HOM05D000536 ORTHO05D004254 1.1e-13 80.5 86 54.7
Lalb_Chr15g0085991 Lupinus albus HOM05D000536 ORTHO05D004254 1.1e-13 80.5 73 57.5
Sp7g14380 Schrenkiella parvula HOM05D000536 ORTHO05D004254 1.1e-13 80.5 85 55.3
Atru.chr6.1992 Acer truncatum HOM05D000536 ORTHO05D004254 1.5e-13 80.1 90 52.2
AUR62018090 Chenopodium quinoa HOM05D000536 ORTHO05D004254 1.5e-13 80.1 83 54.2
Migut.G00136 Erythranthe guttata HOM05D000536 ORTHO05D004254 1.5e-13 80.1 61 59.0
Lj6g0002547 Lotus japonicus HOM05D000536 ORTHO05D004254 1.5e-13 80.1 59 64.4
SGA_v2.0_scaffold18G08347 Striga asiatica HOM05D000536 ORTHO05D004254 1.5e-13 80.1 62 58.1
VMungo1309G0888 Vigna mungo HOM05D000536 ORTHO05D004254 1.5e-13 80.1 77 54.5
arahy.Tifrunner.gnm1.ann1.R1TXIV Arachis hypogaea HOM05D000536 ORTHO05D004254 1.9e-13 79.7 87 54.0
THA.LOC104821782 Tarenaya hassleriana HOM05D000536 ORTHO05D004254 1.9e-13 79.7 85 56.5
ATR0796G105 Amborella trichopoda HOM05D000536 ORTHO05D004254 2.5e-13 79.3 59 61.0
arahy.Tifrunner.gnm1.ann1.RH60A4 Arachis hypogaea HOM05D000536 ORTHO05D004254 2.5e-13 79.3 75 56.0
arahy.Tifrunner.gnm1.ann1.U7S8TD Arachis hypogaea HOM05D000536 ORTHO05D004254 2.5e-13 79.3 75 56.0
FvH4_4g18520 Fragaria vesca HOM05D000536 ORTHO05D004254 2.5e-13 79.3 61 59.0
FAN12G3024 Fragaria x ananassa HOM05D000536 ORTHO05D004254 2.5e-13 79.3 61 59.0
FAN12G3095 Fragaria x ananassa HOM05D000536 ORTHO05D004254 2.5e-13 79.3 61 59.0
Nitab4.5_0000513g0120 Nicotiana tabacum HOM05D000536 ORTHO05D004254 2.5e-13 79.3 86 52.3
Nitab4.5_0002628g0050 Nicotiana tabacum HOM05D000536 ORTHO05D004254 2.5e-13 79.3 86 52.3
RcHm_v2.0_Chr4g0423081 Rosa chinensis HOM05D000536 ORTHO05D004254 2.5e-13 79.3 61 59.0
SalBow2G2779 Salvia bowleyana HOM05D000536 ORTHO05D004254 2.5e-13 79.3 59 62.7
Solyc01g066590.3 Solanum lycopersicum HOM05D000536 ORTHO05D004254 2.5e-13 79.3 86 52.3
Lsat_1_v5_gn_6_96361 Lactuca sativa HOM05D000536 ORTHO05D004254 3.3e-13 79.0 95 48.4
Lalb_Chr07g0177841 Lupinus albus HOM05D000536 ORTHO05D004254 3.3e-13 79.0 79 54.4
Sopen01g028140 Solanum pennellii HOM05D000536 ORTHO05D004254 3.3e-13 79.0 86 52.3
Ca_21483_v3 Cicer arietinum L. HOM05D000536 ORTHO05D004254 4.3e-13 78.6 79 55.7
Glyma.09G043100 Glycine max HOM05D000536 ORTHO05D004254 4.3e-13 78.6 96 49.0
HanXRQChr17g0536091 Helianthus annuus HOM05D000536 ORTHO05D004254 4.3e-13 78.6 72 58.3
THA.LOC104802579 Tarenaya hassleriana HOM05D000536 ORTHO05D004254 4.3e-13 78.6 85 56.5
A03p49470 Brassica napus HOM05D000536 ORTHO05D004254 5.6e-13 78.2 86 53.5
AUR62032013 Chenopodium quinoa HOM05D000536 ORTHO05D004254 5.6e-13 78.2 84 54.8
Duzib052G0143 Durio zibethinus HOM05D000536 ORTHO05D004254 5.6e-13 78.2 83 50.6
Glyma.15G150100 Glycine max HOM05D000536 ORTHO05D004254 5.6e-13 78.2 79 53.2
Gohir.A04G015700 Gossypium hirsutum HOM05D000536 ORTHO05D004254 5.6e-13 78.2 70 55.7
HanXRQChr13g0418081 Helianthus annuus HOM05D000536 ORTHO05D004254 5.6e-13 78.2 59 62.7
HanXRQChr13g0419261 Helianthus annuus HOM05D000536 ORTHO05D004254 5.6e-13 78.2 59 62.7
Lalb_Chr18g0054381 Lupinus albus HOM05D000536 ORTHO05D004254 5.6e-13 78.2 97 50.5
EL10Ac3g06629 Beta vulgaris HOM05D000536 ORTHO05D004254 7.3e-13 77.8 59 61.0
BraA08t33197Z Brassica rapa HOM05D000536 ORTHO05D004254 7.3e-13 77.8 81 53.1
Sc13g0003310 Simmondsia chinensis HOM05D000536 ORTHO05D004254 7.3e-13 77.8 61 55.7
SGA_v2.0_scaffold67G22610 Striga asiatica HOM05D000536 ORTHO05D004254 7.3e-13 77.8 59 59.3
CiPaw.02G080600 Carya illinoinensis HOM05D000536 ORTHO05D004254 9.6e-13 77.4 68 57.4
CDE08G0553 Ceratophyllum demersum HOM05D000536 ORTHO05D004254 9.6e-13 77.4 51 68.6
Lj4g0016938 Lotus japonicus HOM05D000536 ORTHO05D004254 9.6e-13 77.4 67 58.2
Gohir.A01G038300 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.6e-12 76.6 71 56.3
Gorai.006G261500 Gossypium raimondii HOM05D000536 ORTHO05D004254 1.6e-12 76.6 76 53.9
unitig_88.g27712 Utricularia gibba HOM05D000536 ORTHO05D004254 1.6e-12 76.6 81 50.6
Haze_01173 Corylus avellana HOM05D000536 ORTHO05D004254 2.1e-12 76.3 65 56.9
TWI73G0850 Tripterygium wilfordii HOM05D000536 ORTHO05D004254 2.1e-12 76.3 59 59.3
Actinidia14286 Actinidia chinensis HOM05D000536 ORTHO05D004254 2.8e-12 75.9 74 54.1
Actinidia27754 Actinidia chinensis HOM05D000536 ORTHO05D004254 2.8e-12 75.9 74 54.1
Gorai.009G398300 Gossypium raimondii HOM05D000536 ORTHO05D004254 2.8e-12 75.9 70 58.6
ECA240G3254 Erigeron canadensis HOM05D000536 ORTHO05D004254 3.6e-12 75.5 89 49.4
Gohir.A07G100800 Gossypium hirsutum HOM05D001522 ORTHO05D004254 3.6e-12 75.5 71 56.3
Nitab4.5_0001233g0030 Nicotiana tabacum HOM05D000536 ORTHO05D004254 3.6e-12 75.5 56 64.3
TWI09G0576 Tripterygium wilfordii HOM05D000536 ORTHO05D004254 3.6e-12 75.5 62 56.5
Cfa015416 Carpinus fangiana HOM05D000536 ORTHO05D004254 4.8e-12 75.1 90 45.6
Gohir.A04G054932 Gossypium hirsutum HOM05D001522 ORTHO05D004254 4.8e-12 75.1 71 56.3
PRCOL_00005070 Prasinoderma coloniale HOM05D000536 ORTHO05D004254 6.2e-12 74.7 63 55.6
Cre03.g181150 Chlamydomonas reinhardtii HOM05D000536 ORTHO05D004254 8.1e-12 74.3 59 59.3
FAN07G0107 Fragaria x ananassa HOM05D000536 ORTHO05D004254 1.8e-11 73.2 88 46.6
FAN17G2272 Fragaria x ananassa HOM05D000536 ORTHO05D004254 1.8e-11 73.2 88 46.6
Gohir.A09G237900 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.8e-11 73.2 80 48.8
MCO01G119 Micromonas commoda HOM05D000536 ORTHO05D004254 1.8e-11 73.2 63 54.0
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.8e-11 73.2 92 44.6
Nn4g25774 Nelumbo nucifera HOM05D000536 ORTHO05D004254 3.1e-11 72.4 99 45.5
Gohir.D09G238800 Gossypium hirsutum HOM05D000536 ORTHO05D004254 4.0e-11 72.0 51 64.7
Peaxi162Scf00065g01531 Petunia axillaris HOM05D000536 ORTHO05D004254 4.0e-11 72.0 82 51.2
Pp3c23_21620 Physcomitrium patens HOM05D000536 ORTHO05D004254 4.0e-11 72.0 59 55.9
vmacro14178 Vaccinium macrocarpon HOM05D000536 ORTHO05D004254 4.0e-11 72.0 60 58.3
Nitab4.5_0004498g0040 Nicotiana tabacum HOM05D000536 ORTHO05D004254 5.3e-11 71.6 56 60.7
Pp3c20_3493 Physcomitrium patens HOM05D000536 ORTHO05D004254 5.3e-11 71.6 59 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4107 Anthoceros agrestis HOM05D000536 ORTHO05D004254 6.9e-11 71.2 59 55.9
MBI19_g34789_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D004254 6.9e-11 71.2 51 64.7
Mapoly0084s0084 Marchantia polymorpha HOM05D000536 ORTHO05D004254 6.9e-11 71.2 59 55.9
SEGI_03964 Sequoiadendron giganteum HOM05D000536 ORTHO05D004254 6.9e-11 71.2 58 56.9
SMO365G0002 Selaginella moellendorffii HOM05D000536 ORTHO05D004254 1.5e-10 70.1 59 54.2
GSVIVG01035125001 Vitis vinifera HOM05D000536 ORTHO05D004254 1.5e-10 70.1 47 68.1
MBI18_g25343_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D004254 2.6e-10 69.3 51 62.7
CAN.G129.32 Capsicum annuum HOM05D000536 ORTHO05D004254 4.4e-10 68.6 51 62.7
Ca_01965_v3 Cicer arietinum L. HOM05D000536 ORTHO05D004254 5.8e-10 68.2 84 47.6
TPR.G32879 Trifolium pratense HOM05D000536 ORTHO05D004254 4.9e-09 65.1 80 43.8
Ca_01918_v3 Cicer arietinum L. HOM05D000536 ORTHO05D004254 8.4e-09 64.3 59 54.2
Gohir.A09G136400 Gossypium hirsutum HOM05D001522 ORTHO05D004254 1.1e-08 63.9 51 58.8
vmacro08175 Vaccinium macrocarpon HOM05D000536 ORTHO05D004254 1.1e-08 63.9 37 73.0
Psat5g246440 Pisum sativum HOM05D000536 ORTHO05D004254 2.7e-07 59.3 49 51.0
Psat1g155680 Pisum sativum HOM05D000536 ORTHO05D004254 1.7e-06 56.6 83 39.8
CBR_g55380 Chara braunii HOM05D000536 ORTHO05D004254 3.0e-06 55.8 36 63.9


User provided reference genes

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