Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 2.4e-92 342.0 161 100.0
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 3.0e-90 335.1 161 97.5
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 3.3e-81 305.1 152 92.8
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 4.0e-71 271.6 158 77.8
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 73.9
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 6.4e-69 264.2 155 74.8
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 1.1e-68 263.5 161 73.9
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 1.4e-68 263.1 155 76.8
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 4.1e-68 261.5 155 74.8
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 4.1e-68 261.5 153 75.8
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 4.1e-68 261.5 155 74.8
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 4.1e-68 261.5 153 73.9
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 4.1e-68 261.5 153 76.5
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 5.4e-68 261.2 151 76.8
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 5.4e-68 261.2 155 74.2
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 5.4e-68 261.2 153 74.5
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 9.2e-68 260.4 152 76.3
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 9.2e-68 260.4 155 72.9
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 9.2e-68 260.4 155 74.2
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 1.2e-67 260.0 155 73.5
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 1.6e-67 259.6 161 71.4
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 2.1e-67 259.2 155 73.5
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.1e-67 259.2 155 73.5
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 2.1e-67 259.2 153 72.5
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 2.7e-67 258.8 155 72.9
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 3.5e-67 258.5 161 72.0
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 3.5e-67 258.5 161 70.8
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 4.6e-67 258.1 155 72.3
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 4.6e-67 258.1 155 71.6
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 4.6e-67 258.1 155 73.5
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 6.0e-67 257.7 155 73.5
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 6.0e-67 257.7 155 71.6
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 6.0e-67 257.7 155 71.6
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 6.0e-67 257.7 158 72.8
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 7.8e-67 257.3 153 75.8
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 7.8e-67 257.3 155 74.2
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 1.0e-66 256.9 155 72.3
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 1.0e-66 256.9 155 72.3
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 1.0e-66 256.9 156 73.1
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 1.0e-66 256.9 155 72.3
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.3e-66 256.5 161 70.2
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 1.7e-66 256.1 155 71.6
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 2.3e-66 255.8 155 72.3
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 2.3e-66 255.8 161 72.0
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 3.0e-66 255.4 155 72.3
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 3.0e-66 255.4 161 71.4
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 3.0e-66 255.4 153 74.5
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 3.0e-66 255.4 161 70.2
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 3.9e-66 255.0 161 70.2
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 73.5
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 76.2
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 76.2
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 76.2
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 76.2
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 74.8
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 3.9e-66 255.0 151 74.8
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 5.1e-66 254.6 152 73.0
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 5.1e-66 254.6 155 72.3
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 5.1e-66 254.6 159 72.3
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 5.1e-66 254.6 153 73.2
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 6.6e-66 254.2 156 73.1
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 6.6e-66 254.2 153 75.2
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 8.6e-66 253.8 155 73.5
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 1.1e-65 253.4 155 69.7
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.1e-65 253.4 152 72.4
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 1.5e-65 253.1 151 74.2
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.5e-65 253.1 153 73.2
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.5e-65 253.1 153 73.2
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 1.5e-65 253.1 156 72.4
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 1.5e-65 253.1 161 70.8
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 1.9e-65 252.7 155 70.3
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 1.9e-65 252.7 155 70.3
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 1.9e-65 252.7 155 74.2
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 2.5e-65 252.3 144 77.1
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 2.5e-65 252.3 161 69.6
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 2.5e-65 252.3 159 71.1
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 3.3e-65 251.9 163 69.9
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 3.3e-65 251.9 163 69.9
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 1.6e-64 249.6 153 71.9
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 2.1e-64 249.2 156 70.5
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 3.6e-64 248.4 153 71.9
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 3.6e-64 248.4 155 71.6
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 1.8e-63 246.1 155 70.3
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 6.9e-63 244.2 148 73.0
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.5e-62 243.0 157 68.8
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 7.6e-62 240.7 152 69.7
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.7e-61 239.6 157 68.2
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 2.2e-61 239.2 155 67.1
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 2.9e-61 238.8 146 72.6
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 3.8e-61 238.4 211 56.4
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 6.4e-61 237.7 155 70.3
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 3.2e-60 235.3 146 69.9
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 7.1e-60 234.2 134 77.6
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 9.3e-60 233.8 153 70.6
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 2.7e-59 232.3 154 66.2
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 3.5e-59 231.9 155 69.0
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 3.5e-59 231.9 137 76.6
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 6.0e-59 231.1 142 69.0
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.0e-58 230.3 135 74.8
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 1.1e-57 226.9 152 71.1
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 2.1e-56 222.6 135 71.9
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 1.2e-54 216.9 138 68.8
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 1.1e-52 210.3 152 63.8
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 5.4e-52 208.0 117 78.6
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 2.3e-50 202.6 116 75.9
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 3.0e-50 202.2 116 77.6
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.5e-49 199.9 140 59.3
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 1.5e-49 199.9 114 73.7
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 5.6e-49 198.0 149 55.0
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 5.6e-49 198.0 144 63.2
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 1.6e-48 196.4 183 53.6
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 2.1e-48 196.1 122 71.3
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 4.8e-48 194.9 114 73.7
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 2.4e-47 192.6 140 57.9
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 3.5e-43 178.7 96 79.2
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 4.6e-43 178.3 151 58.9
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 3.0e-42 175.6 105 74.3
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 1.5e-41 173.3 95 77.9
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 4.5e-38 161.8 96 68.8
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 1.7e-37 159.8 102 67.6
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 1.4e-36 156.8 135 58.5
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.2e-35 153.7 167 48.5
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 9.7e-33 144.1 155 49.7
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 1.8e-31 139.8 85 74.1
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 3.8e-29 132.1 86 68.6
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 4.3e-25 118.6 73 74.0
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 4.7e-19 98.6 52 76.9
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 1.2e-11 73.9 54 61.1


User provided reference genes

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