Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0343500 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 4.1e-122 441.4 228 100.0
Zm00001eb323950 Zea mays HOM05D010444 ORTHO05D010602 1.9e-42 176.8 230 51.7
Zm00001eb353630 Zea mays HOM05D010444 ORTHO05D010602 7.0e-37 158.3 194 52.1
Os01g0735450 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 1.8e-24 117.1 137 51.1
Zm00001eb117540 Zea mays HOM05D010444 ORTHO05D010602 2.0e-20 103.6 185 41.6
SGA_v2.0_scaffold181G39744 Striga asiatica HOM05D010444 ORTHO05D010602 1.5e-15 87.4 214 38.8
MBI15_g27554_MAGBIO Magnolia biondii HOM05D010444 ORTHO05D010602 6.4e-14 82.0 191 37.7
SGA_v2.0_scaffold32G13151 Striga asiatica HOM05D000068 ORTHO05D008806 1.6e-12 77.4 170 36.5
Os09g0518266 Oryza sativa ssp. japonica HOM05D011891 ORTHO05D014146 2.7e-12 76.6 183 35.5
Migut.J01735 Erythranthe guttata HOM05D015573 ORTHO05D010602 1.0e-11 74.7 205 32.7
Zm00001eb279500 Zea mays HOM05D031261 ORTHO05D010602 2.3e-11 73.6 214 35.5
AT4G34139 Arabidopsis thaliana HOM05D014563 ORTHO05D010602 3.0e-11 73.2 194 32.5
Os07g0503200 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 8.6e-11 71.6 180 36.7
CiPaw.05G034500 Carya illinoinensis HOM05D011587 ORTHO05D010602 3.3e-10 69.7 123 43.1
MBI05_g34728_MAGBIO Magnolia biondii HOM05D011587 ORTHO05D010602 3.3e-10 69.7 175 38.3
MBI17_g19033_MAGBIO Magnolia biondii HOM05D014563 ORTHO05D010602 1.2e-09 67.8 191 35.6
Os04g0523650 Oryza sativa ssp. japonica HOM05D031261 ORTHO05D010602 2.8e-09 66.6 144 37.5
FAN14G5886 Fragaria x ananassa HOM05D010444 ORTHO05D010602 6.2e-09 65.5 149 36.2
Zm00001eb280960 Zea mays HOM05D010444 ORTHO05D051413 1.1e-08 64.7 144 38.9
SGA_v2.0_scaffold66G22474 Striga asiatica HOM05D011891 ORTHO05D010602 2.3e-08 63.5 101 43.6
CiPaw.10G145000 Carya illinoinensis HOM05D011587 ORTHO05D010602 1.5e-07 60.8 150 36.7
Zm00001eb244580 Zea mays HOM05D011587 ORTHO05D010602 1.5e-07 60.8 197 35.0
CiPaw.04G102100 Carya illinoinensis HOM05D011587 ORTHO05D010602 2.0e-07 60.5 148 39.2
Eucgr.H04761 Eucalyptus grandis HOM05D011587 ORTHO05D010602 4.4e-07 59.3 114 38.6
Os02g0578201 Oryza sativa ssp. japonica HOM05D011587 ORTHO05D010602 4.4e-07 59.3 132 40.2
Os04g0523812 Oryza sativa ssp. japonica HOM05D031261 ORTHO05D010602 4.4e-07 59.3 151 34.4
Manes.12G036450 Manihot esculenta HOM05D014563 ORTHO05D010602 9.9e-07 58.2 178 33.7
SGA_v2.0_scaffold12G06190 Striga asiatica HOM05D011891 ORTHO05D014146 1.7e-06 57.4 184 32.1
MBI02_g27281_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000066 2.2e-06 57.0 134 35.8
Manes.01G120601 Manihot esculenta HOM05D014563 ORTHO05D010602 6.4e-06 55.5 186 32.3


User provided reference genes

Program Settings