Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 1.9e-311 1071.6 559 100.0
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 2.7e-247 858.6 630 75.2
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 1.4e-192 676.8 445 83.4
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 1.1e-181 640.6 573 60.0
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 2.2e-180 636.3 576 60.6
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 3.7e-180 635.6 575 61.2
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 9.0e-179 630.9 571 59.7
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 2.0e-178 629.8 563 61.6
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 2.2e-177 626.3 575 59.5
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 1.9e-176 623.2 575 59.0
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 2.5e-176 622.9 570 59.5
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 2.5e-176 622.9 578 58.8
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 4.2e-176 622.1 560 60.4
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 1.6e-175 620.2 574 58.7
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 2.1e-175 619.8 561 60.8
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 2.7e-175 619.4 567 60.3
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 3.6e-175 619.0 565 59.3
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 3.6e-175 619.0 563 60.9
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 7.9e-175 617.8 562 60.9
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 1.0e-174 617.5 573 58.6
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 1.4e-174 617.1 567 59.6
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 2.3e-174 616.3 566 59.5
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.3e-174 616.3 561 60.4
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 3.0e-174 615.9 573 59.7
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 3.9e-174 615.5 574 58.0
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 5.1e-174 615.1 563 60.2
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 6.7e-174 614.8 565 59.1
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 2.0e-173 613.2 568 60.0
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 2.0e-173 613.2 573 57.2
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 2.0e-173 613.2 573 58.8
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 2.5e-173 612.8 568 59.3
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 7.4e-173 611.3 570 58.6
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 9.7e-173 610.9 561 59.9
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 1.3e-172 610.5 569 57.6
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 2.2e-172 609.8 570 58.9
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 2.2e-172 609.8 568 58.6
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 2.8e-172 609.4 572 57.9
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 3.7e-172 609.0 574 58.7
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 4.8e-172 608.6 568 59.3
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 6.3e-172 608.2 578 58.8
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.8e-171 606.7 561 59.9
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 2.4e-171 606.3 571 58.7
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 3.1e-171 605.9 557 60.5
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 4.1e-171 605.5 568 58.1
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 5.3e-171 605.1 571 58.3
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 5.3e-171 605.1 571 58.5
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 9.1e-171 604.4 575 57.6
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 9.1e-171 604.4 572 57.3
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 1.5e-170 603.6 562 58.2
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 2.0e-170 603.2 567 58.6
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 2.6e-170 602.8 569 58.9
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 2.6e-170 602.8 568 57.9
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 3.4e-170 602.4 565 58.1
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 4.5e-170 602.1 562 58.0
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 4.5e-170 602.1 566 58.5
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 7.7e-170 601.3 573 58.6
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 1.0e-169 600.9 573 57.4
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 2.9e-169 599.4 572 57.2
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 6.5e-169 598.2 569 58.5
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 1.4e-168 597.0 567 58.4
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 1.2e-167 594.0 560 57.0
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 2.1e-167 593.2 597 55.4
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 3.6e-167 592.4 565 57.7
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 4.7e-167 592.0 573 57.1
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 4.7e-167 592.0 572 57.3
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 6.1e-167 591.7 569 57.3
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 7.9e-167 591.3 565 56.8
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 7.9e-167 591.3 576 57.5
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 1.0e-166 590.9 571 57.4
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 1.4e-166 590.5 570 57.7
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 1.4e-166 590.5 555 58.2
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 3.0e-166 589.3 572 58.7
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 3.0e-166 589.3 568 56.7
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 3.0e-166 589.3 568 57.7
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 3.9e-166 589.0 565 57.9
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 6.7e-166 588.2 599 55.1
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 8.8e-166 587.8 579 56.3
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 8.8e-166 587.8 564 57.1
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 3.3e-165 585.9 551 57.7
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 5.7e-165 585.1 639 53.1
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 3.7e-164 582.4 568 56.2
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 3.1e-163 579.3 555 56.8
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 3.1e-163 579.3 555 56.8
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 3.1e-163 579.3 555 56.8
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 4.1e-163 578.9 567 57.0
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 5.9e-162 575.1 555 56.6
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 5.9e-162 575.1 555 56.6
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 1.0e-161 574.3 566 55.5
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 5.0e-153 545.4 565 55.4
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 8.0e-151 538.1 533 56.8
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 8.8e-150 534.6 569 54.1
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 7.5e-149 531.6 521 55.9
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 2.2e-148 530.0 531 56.1
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 3.8e-145 519.2 561 53.7
Peaxi162Scf00258g00117 Petunia axillaris HOM05D006621 ORTHO05D008425 1.0e-137 494.6 487 57.3
Psat6g126120 Pisum sativum HOM05D006621 ORTHO05D008425 2.0e-133 480.3 508 53.9
Mapoly0080s0041 Marchantia polymorpha HOM05D006621 ORTHO05D008425 1.3e-116 424.5 576 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2467 Anthoceros agrestis HOM05D006621 ORTHO05D008425 1.2e-111 407.9 557 42.7
Cpa.g.sc85.87 Carica papaya HOM05D006621 ORTHO05D008425 9.5e-104 381.7 412 52.9
Pp3c23_21740 Physcomitrium patens HOM05D006621 ORTHO05D008425 4.8e-95 352.8 579 37.3
CBR_g3749 Chara braunii HOM05D006621 ORTHO05D008425 5.3e-94 349.4 587 38.3
SMO134G0088 Selaginella moellendorffii HOM05D006621 ORTHO05D008425 9.0e-94 348.6 552 40.4
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 4.9e-92 342.8 402 52.0
TAR636G0143 Trochodendron aralioides HOM05D006621 ORTHO05D008425 1.1e-88 331.6 235 70.6
MD12G1060300 Malus domestica HOM05D006621 ORTHO05D008425 1.3e-81 308.1 217 69.6
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 2.7e-74 283.9 298 56.4
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 6.0e-74 282.7 295 55.6
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 1.0e-65 255.4 224 64.3
SEGI_27578 Sequoiadendron giganteum HOM05D006621 ORTHO05D008425 1.4e-62 245.0 174 64.9
DCAR_019796 Daucus carota HOM05D006621 ORTHO05D008425 5.9e-61 239.6 206 60.2
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 9.7e-56 222.2 365 42.5
Cre01.g047229 Chlamydomonas reinhardtii HOM05D006621 ORTHO05D008425 3.6e-50 203.8 579 30.2
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 7.9e-50 202.6 152 67.8
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 1.7e-44 184.9 213 51.6
RcHm_v2.0_Chr3g0476251 Rosa chinensis HOM05D006621 ORTHO05D008425 2.0e-32 144.8 156 55.8
Lsat_1_v5_gn_5_170341 Lactuca sativa HOM05D006621 ORTHO05D008425 9.4e-27 125.9 154 45.5
FAN02G0678 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.0e-17 95.9 66 65.2
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 2.5e-11 74.7 50 78.0
DCAR_028612 Daucus carota HOM05D006621 ORTHO05D008425 1.5e-08 65.5 42 73.8


User provided reference genes

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