Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 7.2e-52 206.8 95 100.0
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 1.8e-39 165.6 86 86.0
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 3.2e-36 154.8 87 79.3
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 2.1e-27 125.6 78 70.5
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 1.8e-23 112.5 79 68.4
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 1.2e-22 109.8 79 63.3
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 1.6e-22 109.4 78 66.7
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 2.0e-22 109.0 76 63.2
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 3.5e-22 108.2 78 61.5
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 3.5e-22 108.2 78 60.3
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 5.9e-22 107.5 78 65.4
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 7.7e-22 107.1 78 59.0
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 7.7e-22 107.1 78 59.0
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 1.3e-21 106.3 78 62.8
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 3.8e-21 104.8 78 62.8
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 5.0e-21 104.4 78 62.8
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 1.9e-20 102.4 78 62.8
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 2.5e-20 102.1 80 63.8
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 4.2e-20 101.3 83 60.2
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 7.2e-20 100.5 82 54.9
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 9.4e-20 100.1 75 60.0
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 9.4e-20 100.1 78 56.4
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 1.2e-19 99.8 75 61.3
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 2.1e-19 99.0 75 61.3
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 2.7e-19 98.6 75 61.3
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 4.7e-19 97.8 76 61.8
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 6.1e-19 97.4 78 55.1
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 1.0e-18 96.7 75 60.0
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 1.0e-18 96.7 79 59.5
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 1.0e-18 96.7 77 55.8
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 1.0e-18 96.7 75 60.0
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 1.4e-18 96.3 75 58.7
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.4e-18 96.3 79 54.4
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 1.4e-18 96.3 77 57.1
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 1.8e-18 95.9 78 53.8
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 1.8e-18 95.9 81 56.8
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.8e-18 95.9 74 58.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.8e-18 95.9 74 59.5
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 2.3e-18 95.5 75 58.7
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 2.3e-18 95.5 75 58.7
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 2.3e-18 95.5 75 58.7
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 2.3e-18 95.5 81 58.0
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 3.0e-18 95.1 80 55.0
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 3.0e-18 95.1 75 56.0
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 3.0e-18 95.1 82 53.7
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 4.0e-18 94.7 76 60.5
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 4.0e-18 94.7 78 57.7
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 5.2e-18 94.4 86 54.7
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 5.2e-18 94.4 70 62.9
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 6.8e-18 94.0 75 57.3
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 6.8e-18 94.0 75 57.3
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 6.8e-18 94.0 75 57.3
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 6.8e-18 94.0 78 55.1
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 6.8e-18 94.0 75 60.0
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 8.8e-18 93.6 77 59.7
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 8.8e-18 93.6 73 60.3
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 8.8e-18 93.6 75 57.3
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 8.8e-18 93.6 75 57.3
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 8.8e-18 93.6 75 57.3
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 8.8e-18 93.6 68 67.6
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 8.8e-18 93.6 78 52.6
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 1.5e-17 92.8 75 57.3
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 1.5e-17 92.8 77 55.8
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 2.0e-17 92.4 77 55.8
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 2.0e-17 92.4 82 53.7
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 2.0e-17 92.4 78 52.6
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 2.6e-17 92.0 75 54.7
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 2.6e-17 92.0 77 54.5
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 2.6e-17 92.0 76 56.6
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 3.4e-17 91.7 78 59.0
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 3.4e-17 91.7 74 60.8
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.4e-17 91.7 76 56.6
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 4.4e-17 91.3 78 53.8
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 4.4e-17 91.3 78 51.3
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 4.4e-17 91.3 78 51.3
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 5.7e-17 90.9 78 53.8
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 5.7e-17 90.9 78 53.8
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 7.5e-17 90.5 82 51.2
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 7.5e-17 90.5 78 53.8
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 9.8e-17 90.1 84 56.0
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 1.3e-16 89.7 74 56.8
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 1.3e-16 89.7 78 53.8
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 1.3e-16 89.7 81 53.1
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.2e-16 89.0 80 51.2
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 2.2e-16 89.0 79 50.6
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 2.2e-16 89.0 77 51.9
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 2.2e-16 89.0 77 50.6
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.8e-16 88.6 78 52.6
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 2.8e-16 88.6 77 55.8
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 3.7e-16 88.2 73 53.4
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 4.8e-16 87.8 77 53.2
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 6.3e-16 87.4 76 53.9
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 6.3e-16 87.4 77 54.5
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 1.1e-15 86.7 77 53.2
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 1.8e-15 85.9 74 55.4
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 1.8e-15 85.9 79 50.6
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 1.8e-15 85.9 77 54.5
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 1.8e-15 85.9 77 54.5
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 2.4e-15 85.5 72 52.8
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 3.1e-15 85.1 81 49.4
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 5.4e-15 84.3 78 51.3
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 9.1e-15 83.6 81 48.1
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 2.0e-14 82.4 88 45.5
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 4.5e-14 81.3 77 50.6
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 3.8e-13 78.2 80 46.2
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 3.8e-13 78.2 80 46.2
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.8e-13 78.2 37 97.3
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 5.0e-13 77.8 73 47.9
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 4.7e-11 71.2 43 67.4
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.8e-10 69.3 68 45.6
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.3e-10 68.9 61 49.2
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 1.5e-09 66.2 83 41.0
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.0e-09 65.9 75 40.0
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 2.6e-09 65.5 81 43.2
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 3.4e-09 65.1 67 46.3
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 4.4e-09 64.7 71 36.6
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.7e-08 62.8 81 39.5
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 1.4e-07 59.7 28 75.0
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 1.8e-07 59.3 50 58.0
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 7.8e-06 53.9 73 38.4


User provided reference genes

Program Settings