Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0303700 Oryza sativa ssp. japonica HOM05D003215 ORTHO05D003735 2.8e-245 851.7 485 100.0
Zm00001eb172100 Zea mays HOM05D003215 ORTHO05D003735 4.7e-75 286.2 397 45.8
TWI18G1003 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 1.3e-40 171.8 166 49.4
CiPaw.15G124500 Carya illinoinensis HOM05D003215 ORTHO05D003735 1.9e-39 167.9 157 51.0
SGA_v2.0_scaffold114G31828 Striga asiatica HOM05D003215 ORTHO05D003735 7.1e-39 166.0 157 49.0
Cpa.g.sc65.22 Carica papaya HOM05D003215 ORTHO05D003735 2.1e-38 164.5 158 53.2
AUR62027593 Chenopodium quinoa HOM05D003215 ORTHO05D003735 1.8e-37 161.4 182 44.5
MSTRG.4371 Avicennia marina HOM05D003215 ORTHO05D003735 2.3e-37 161.0 167 46.7
CiPaw.11G100100 Carya illinoinensis HOM05D003215 ORTHO05D003735 3.9e-37 160.2 157 49.7
PGR083G2356 Punica granatum HOM05D003215 ORTHO05D003735 6.7e-37 159.5 170 48.2
MELO3C006154.2 Cucumis melo HOM05D003215 ORTHO05D003735 8.7e-37 159.1 158 46.2
Cfa013261 Carpinus fangiana HOM05D003215 ORTHO05D003735 1.5e-36 158.3 162 49.4
CsaV3_3G009340 Cucumis sativus L. HOM05D003215 ORTHO05D003735 3.3e-36 157.1 162 45.1
Migut.D01938 Erythranthe guttata HOM05D003215 ORTHO05D003735 4.3e-36 156.8 157 47.8
QL05p019413 Quercus lobata HOM05D003215 ORTHO05D003735 5.7e-36 156.4 157 50.3
QL09p047318 Quercus lobata HOM05D003215 ORTHO05D003735 5.7e-36 156.4 157 50.3
Lalb_Chr01g0022221 Lupinus albus HOM05D003215 ORTHO05D003735 7.4e-36 156.0 178 46.1
EL10Ac1g02277 Beta vulgaris HOM05D003215 ORTHO05D003735 9.7e-36 155.6 228 39.5
Ciclev10014556m.g Citrus clementina HOM05D003215 ORTHO05D003735 2.2e-35 154.5 179 42.5
Duzib168G1098 Durio zibethinus HOM05D003215 ORTHO05D003735 3.7e-35 153.7 164 46.3
HanXRQChr10g0309901 Helianthus annuus HOM05D003215 ORTHO05D003735 3.7e-35 153.7 156 46.8
RcHm_v2.0_Chr5g0058161 Rosa chinensis HOM05D003215 ORTHO05D003735 3.7e-35 153.7 183 43.7
TAR626G0419 Trochodendron aralioides HOM05D003215 ORTHO05D003735 3.7e-35 153.7 271 38.0
ClCG05G001940 Citrullus lanatus HOM05D003215 ORTHO05D003735 6.3e-35 152.9 186 41.9
MD04G1037700 Malus domestica HOM05D003215 ORTHO05D003735 6.3e-35 152.9 178 44.9
SGA_v2.0_scaffold124G33628 Striga asiatica HOM05D003215 ORTHO05D003735 6.3e-35 152.9 171 44.4
Thecc.09G346500 Theobroma cacao HOM05D003215 ORTHO05D003735 6.3e-35 152.9 275 37.1
Glyma.13G128500 Glycine max HOM05D003215 ORTHO05D003735 8.2e-35 152.5 171 45.6
Lj4C665T1 Lonicera japonica HOM05D003215 ORTHO05D003735 8.2e-35 152.5 313 35.8
unitig_52.g17692 Utricularia gibba HOM05D003215 ORTHO05D003735 1.1e-34 152.1 231 39.4
Peaxi162Scf01390g00031 Petunia axillaris HOM05D001168 ORTHO05D003735 1.4e-34 151.8 467 31.0
CAN.G3121.3 Capsicum annuum HOM05D003215 ORTHO05D003735 3.1e-34 150.6 157 43.9
Potri.003G168900 Populus trichocarpa HOM05D003215 ORTHO05D003735 3.1e-34 150.6 428 32.7
AUR62030249 Chenopodium quinoa HOM05D003215 ORTHO05D003735 5.3e-34 149.8 472 30.3
CAN.G861.12 Capsicum annuum HOM05D003215 ORTHO05D003735 6.9e-34 149.4 172 40.7
Phvul.007G154900 Phaseolus vulgaris HOM05D003215 ORTHO05D003735 6.9e-34 149.4 178 41.6
FAN21G3495 Fragaria x ananassa HOM05D003215 ORTHO05D003735 1.2e-33 148.7 303 34.0
PSO170G2126 Papaver somniferum HOM05D003215 ORTHO05D003735 1.2e-33 148.7 169 44.4
TWI31G0413 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 1.5e-33 148.3 515 31.5
Ciclev10030284m.g Citrus clementina HOM05D003215 ORTHO05D003735 2.0e-33 147.9 420 30.5
Dinv29349 Davidia involucrata HOM05D003215 ORTHO05D003735 2.0e-33 147.9 326 35.6
Lj4C675G2 Lonicera japonica HOM05D003215 ORTHO05D003735 2.0e-33 147.9 209 40.2
MBI05_g27786_MAGBIO Magnolia biondii HOM05D003215 ORTHO05D003735 2.6e-33 147.5 184 45.1
Sed0005911 Sechium edule HOM05D003215 ORTHO05D003735 4.5e-33 146.7 313 36.7
Cc11_g08560 Coffea canephora HOM05D003215 ORTHO05D003735 5.9e-33 146.4 187 45.5
PSO357G0671 Papaver somniferum HOM05D003215 ORTHO05D003735 5.9e-33 146.4 177 42.4
Nitab4.5_0000712g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 7.7e-33 146.0 188 38.3
Peaxi162Scf00029g00131 Petunia axillaris HOM05D003215 ORTHO05D003735 7.7e-33 146.0 179 41.9
Atru.chr3.3574 Acer truncatum HOM05D003215 ORTHO05D003735 1.3e-32 145.2 176 43.8
Aqoxy2G04188 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 2.9e-32 144.1 204 41.2
Lsat_1_v5_gn_7_104201 Lactuca sativa HOM05D003215 ORTHO05D003735 2.9e-32 144.1 163 44.8
PGSC0003DMG400015274 Solanum tuberosum HOM05D003215 ORTHO05D003735 2.9e-32 144.1 308 34.1
CAN.G861.14 Capsicum annuum HOM05D003215 ORTHO05D003735 5.0e-32 143.3 147 44.2
Aqoxy6G03074 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 6.5e-32 142.9 204 41.2
Actinidia34779 Actinidia chinensis HOM05D003215 ORTHO05D003735 8.5e-32 142.5 463 29.8
Aqoxy4G00232 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 8.5e-32 142.5 204 40.7
Sopen08g019870 Solanum pennellii HOM05D003215 ORTHO05D003735 1.1e-31 142.1 174 43.1
Ca_14134_v3 Cicer arietinum L. HOM05D003215 ORTHO05D003735 1.4e-31 141.7 171 43.3
Haze_21721 Corylus avellana HOM05D003215 ORTHO05D003735 2.5e-31 141.0 296 37.8
Sc24g0002070 Simmondsia chinensis HOM05D003215 ORTHO05D003735 2.5e-31 141.0 187 41.2
Solyc08g066190.2 Solanum lycopersicum HOM05D003215 ORTHO05D003735 2.5e-31 141.0 180 40.6
Gorai.013G268300 Gossypium raimondii HOM05D003215 ORTHO05D003735 3.2e-31 140.6 164 43.3
Lj1g0005602 Lotus japonicus HOM05D003215 ORTHO05D003735 3.2e-31 140.6 248 36.3
Peaxi162Scf01390g00030 Petunia axillaris HOM05D003215 ORTHO05D003735 3.2e-31 140.6 485 29.5
HanXRQChr11g0328481 Helianthus annuus HOM05D003215 ORTHO05D003735 4.2e-31 140.2 330 35.2
LjContig00081g0004985 Lotus japonicus HOM05D003215 ORTHO05D003735 4.2e-31 140.2 316 34.2
Gohir.D13G237500 Gossypium hirsutum HOM05D003215 ORTHO05D003735 5.5e-31 139.8 164 43.3
Nitab4.5_0004170g0030 Nicotiana tabacum HOM05D003215 ORTHO05D003735 5.5e-31 139.8 301 33.2
Atru.chr3.3575 Acer truncatum HOM05D003215 ORTHO05D003735 7.2e-31 139.4 166 44.6
CSS0012061 Camellia sinensis var. sinensis HOM05D003215 ORTHO05D003735 7.2e-31 139.4 501 29.3
Lj3g0014709 Lotus japonicus HOM05D003215 ORTHO05D003735 7.2e-31 139.4 243 36.6
CANSAT54G0322 Cannabis sativa HOM05D003215 ORTHO05D003735 9.4e-31 139.0 195 39.5
Manes.11G149200 Manihot esculenta HOM05D003215 ORTHO05D003735 9.4e-31 139.0 482 29.9
Manes.04G016500 Manihot esculenta HOM05D003215 ORTHO05D003735 1.6e-30 138.3 355 31.5
EL10As2g23156 Beta vulgaris HOM05D003215 ORTHO05D003735 2.1e-30 137.9 512 30.7
Haze_25499 Corylus avellana HOM05D003215 ORTHO05D003735 3.6e-30 137.1 161 44.1
Sp7g00890 Schrenkiella parvula HOM05D003215 ORTHO05D003735 3.6e-30 137.1 157 39.5
Sopen08g003240 Solanum pennellii HOM05D003215 ORTHO05D003735 3.6e-30 137.1 180 38.9
TPR.G16275 Trifolium pratense HOM05D003215 ORTHO05D003735 3.6e-30 137.1 159 44.0
FvH4_3g31460 Fragaria vesca HOM05D003215 ORTHO05D003735 4.6e-30 136.7 470 29.6
FAN16G3289 Fragaria x ananassa HOM05D003215 ORTHO05D003735 4.6e-30 136.7 470 30.0
Nitab4.5_0000185g0060 Nicotiana tabacum HOM05D003215 ORTHO05D003735 6.1e-30 136.3 178 38.2
PGSC0003DMG400011852 Solanum tuberosum HOM05D003215 ORTHO05D003735 7.9e-30 136.0 368 31.0
Aa31LG9G1040 Aethionema arabicum HOM05D003215 ORTHO05D003735 1.0e-29 135.6 170 43.5
FAN11G0613 Fragaria x ananassa HOM05D003215 ORTHO05D003735 1.0e-29 135.6 473 28.8
THA.LOC104815051 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.0e-29 135.6 156 42.3
TPR.G20272 Trifolium pratense HOM05D003215 ORTHO05D003735 1.0e-29 135.6 169 42.0
Solyc08g007300.3 Solanum lycopersicum HOM05D003215 ORTHO05D003735 1.4e-29 135.2 180 38.3
C04p48090 Brassica napus HOM05D003215 ORTHO05D003735 1.8e-29 134.8 173 36.4
BolC4t26400H Brassica oleracea HOM05D003215 ORTHO05D003735 1.8e-29 134.8 173 36.4
Oeu050248.1 Olea europaea HOM05D003215 ORTHO05D003735 1.8e-29 134.8 535 28.4
Sabra03G0123800 Salix brachista HOM05D003215 ORTHO05D003735 1.8e-29 134.8 438 29.9
SalBow6G4532 Salvia bowleyana HOM05D003215 ORTHO05D003735 1.8e-29 134.8 475 32.6
TWI31G0331 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 1.8e-29 134.8 449 30.3
Potri.015G095000 Populus trichocarpa HOM05D003215 ORTHO05D003735 3.0e-29 134.0 437 30.2
THA.LOC104816721 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 3.0e-29 134.0 171 39.2
vmacro10400 Vaccinium macrocarpon HOM05D003215 ORTHO05D003735 3.0e-29 134.0 190 40.0
arahy.Tifrunner.gnm1.ann1.7W7N8S Arachis hypogaea HOM05D003215 ORTHO05D003735 3.9e-29 133.7 164 41.5
Migut.D01937 Erythranthe guttata HOM05D003215 ORTHO05D003735 3.9e-29 133.7 422 30.1
Nn7g37196 Nelumbo nucifera HOM05D003215 ORTHO05D003735 3.9e-29 133.7 521 28.8
THA.LOC104815151 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 5.1e-29 133.3 156 41.7
Nitab4.5_0000712g0020 Nicotiana tabacum HOM05D003215 ORTHO05D003735 6.7e-29 132.9 178 38.2
PSO210G2437 Papaver somniferum HOM05D003215 ORTHO05D003735 6.7e-29 132.9 141 43.3
Prupe.6G106700 Prunus persica HOM05D003215 ORTHO05D003735 1.1e-28 132.1 291 33.3
BcaB06g27584 Brassica carinata HOM05D003215 ORTHO05D003735 2.5e-28 131.0 162 37.7
Aa31LG9G750 Aethionema arabicum HOM05D003215 ORTHO05D003735 3.3e-28 130.6 159 42.8
Carub.0007s3447 Capsella rubella HOM05D003215 ORTHO05D003735 7.4e-28 129.4 158 39.9
PSO210G2801 Papaver somniferum HOM05D003215 ORTHO05D003735 1.3e-27 128.6 141 42.6
Prupe.6G210800 Prunus persica HOM05D003215 ORTHO05D003735 2.2e-27 127.9 473 27.5
Psat4g091440 Pisum sativum HOM05D003215 ORTHO05D003735 3.7e-27 127.1 165 39.4
AL7G48530 Arabidopsis lyrata HOM05D003215 ORTHO05D003735 4.8e-27 126.7 171 37.4
Nitab4.5_0000185g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 4.8e-27 126.7 148 40.5
CARHR213350 Cardamine hirsuta HOM05D003215 ORTHO05D003735 6.3e-27 126.3 156 38.5
Actinidia38907 Actinidia chinensis HOM05D003215 ORTHO05D003735 8.2e-27 125.9 119 48.7
BcaB06g26361 Brassica carinata HOM05D003215 ORTHO05D003735 1.1e-26 125.6 134 41.0
CDE11G0705 Ceratophyllum demersum HOM05D003215 ORTHO05D003735 1.8e-26 124.8 291 32.3
BraA04t17067Z Brassica rapa HOM05D003215 ORTHO05D003735 3.1e-26 124.0 172 35.5
Sopen03g029820 Solanum pennellii HOM05D003215 ORTHO05D003735 3.1e-26 124.0 480 30.0
A04p14060 Brassica napus HOM05D003215 ORTHO05D003735 4.1e-26 123.6 174 35.6
AT5G41020 Arabidopsis thaliana HOM05D003215 ORTHO05D003735 5.3e-26 123.2 157 37.6
Thhalv10027663m.g Eutrema salsugineum HOM05D003215 ORTHO05D003735 5.3e-26 123.2 164 36.0
Atru.chr3.3572 Acer truncatum HOM05D003215 ORTHO05D003735 9.1e-26 122.5 114 47.4
COL.COLO4_18286 Corchorus olitorius HOM05D003215 ORTHO05D003735 9.1e-26 122.5 491 26.1
DCAR_008318 Daucus carota HOM05D003215 ORTHO05D003735 9.1e-26 122.5 126 44.4
Hund25131 Selenicereus undatus HOM05D003215 ORTHO05D003735 1.2e-25 122.1 309 29.1
SHI08388 Sapria himalayana HOM05D003215 ORTHO05D003735 1.5e-25 121.7 157 38.2
DCAR_004337 Daucus carota HOM05D003215 ORTHO05D003735 2.0e-25 121.3 148 41.2
DCAR_024215 Daucus carota HOM05D003215 ORTHO05D003735 2.0e-25 121.3 148 41.2
DCAR_024216 Daucus carota HOM05D003215 ORTHO05D003735 2.6e-25 120.9 148 41.2
Eucgr.H02514 Eucalyptus grandis HOM05D003215 ORTHO05D003735 2.6e-25 120.9 478 27.4
Psat1g024480 Pisum sativum HOM05D003215 ORTHO05D003735 7.7e-25 119.4 167 40.1
BcaC02g08984 Brassica carinata HOM05D003215 ORTHO05D003735 1.0e-24 119.0 129 38.8
BcaC09g51256 Brassica carinata HOM05D003215 ORTHO05D003735 6.5e-24 116.3 123 39.8
Oeu046322.1 Olea europaea HOM05D003215 ORTHO05D003735 6.5e-24 116.3 498 27.9
ECA233G3624 Erigeron canadensis HOM05D003215 ORTHO05D003735 1.4e-23 115.2 309 31.7
Hma1.2p1_0892F.1_g233410 Hydrangea macrophylla HOM05D003215 ORTHO05D003735 5.5e-23 113.2 499 27.3
TPR.G12921 Trifolium pratense HOM05D003215 ORTHO05D003735 9.4e-23 112.5 143 42.0
Gohir.A13G231900 Gossypium hirsutum HOM05D003215 ORTHO05D003735 6.1e-22 109.8 110 44.5
EL10Ac6g13885 Beta vulgaris HOM05D003215 ORTHO05D003735 3.9e-21 107.1 417 27.6
PSO675G7906 Papaver somniferum HOM05D003215 ORTHO05D003735 5.1e-21 106.7 86 57.0
Rhsim09G0130800 Rhododendron simsii HOM05D003215 ORTHO05D003735 5.1e-21 106.7 505 27.9
Peaxi162Scf25743g00024 Petunia axillaris HOM05D003215 ORTHO05D003735 8.8e-21 105.9 179 31.8
Peaxi162Scf41047g00002 Petunia axillaris HOM05D003215 ORTHO05D003735 8.8e-21 105.9 179 31.8
Peaxi162Scf00102g01055 Petunia axillaris HOM05D003215 ORTHO05D003735 1.5e-20 105.1 181 33.7
BcaC05g28060 Brassica carinata HOM05D003215 ORTHO05D003735 2.0e-20 104.8 141 34.8
Peaxi162Scf25743g00022 Petunia axillaris HOM05D003215 ORTHO05D003735 5.7e-20 103.2 181 33.1
Peaxi162Scf25743g00029 Petunia axillaris HOM05D003215 ORTHO05D003735 5.7e-20 103.2 181 33.1
RcHm_v2.0_Chr7g0227601 Rosa chinensis HOM05D003215 ORTHO05D003735 5.7e-20 103.2 184 33.7
HPP92_007494 Vanilla planifolia HOM05D003215 ORTHO05D003735 5.7e-20 103.2 186 34.9
Aa31LG9G1030 Aethionema arabicum HOM05D003215 ORTHO05D003735 7.4e-20 102.8 121 44.6
Nitab4.5_0000712g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 1.3e-19 102.1 315 30.8
PSO210G4767 Papaver somniferum HOM05D003215 ORTHO05D003735 1.3e-19 102.1 160 37.5
BcaNung03841 Brassica carinata HOM05D003215 ORTHO05D003735 2.8e-19 100.9 173 30.1
RcHm_v2.0_Chr7g0222751 Rosa chinensis HOM05D003215 ORTHO05D003735 2.8e-19 100.9 148 39.2
PSO210G0114 Papaver somniferum HOM05D003215 ORTHO05D003735 3.7e-19 100.5 94 46.8
PSO210G4537 Papaver somniferum HOM05D003215 ORTHO05D003735 8.2e-19 99.4 94 44.7
Peaxi162Scf25743g00028 Petunia axillaris HOM05D003215 ORTHO05D003735 8.2e-19 99.4 179 30.2
ECA236G3716 Erigeron canadensis HOM05D003215 ORTHO05D003735 2.4e-18 97.8 485 24.3
Medtr8g077990 Medicago truncatula HOM05D003215 ORTHO05D003735 9.1e-18 95.9 159 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2899 Anthoceros agrestis HOM05D003215 ORTHO05D003735 3.6e-14 84.0 178 35.4
Sed0019703 Sechium edule HOM05D003215 ORTHO05D003735 3.9e-13 80.5 146 32.9
Mapoly0158s0003 Marchantia polymorpha HOM05D003215 ORTHO05D003735 8.8e-13 79.3 116 34.5
PGSC0003DMG400015272 Solanum tuberosum HOM05D003215 ORTHO05D003735 1.1e-12 79.0 179 32.4
BolC1t01455H Brassica oleracea HOM05D003215 ORTHO05D003735 3.7e-11 73.9 83 39.8
C01p15060 Brassica napus HOM05D003215 ORTHO05D003735 8.2e-11 72.8 83 39.8
Solyc03g019800.4 Solanum lycopersicum HOM05D003215 ORTHO05D003735 5.3e-10 70.1 326 26.1
Mapoly0057s0043 Marchantia polymorpha HOM05D003215 ORTHO05D003735 1.2e-09 68.9 145 29.7
SEGI_14072 Sequoiadendron giganteum HOM05D003215 ORTHO05D003735 1.2e-09 68.9 67 47.8
Peaxi162Scf00102g01057 Petunia axillaris HOM05D003215 ORTHO05D003735 5.9e-09 66.6 170 29.4
PRCOL_00005270 Prasinoderma coloniale HOM05D003215 ORTHO05D003735 1.0e-08 65.9 129 31.0
Peaxi162Scf25743g00030 Petunia axillaris HOM05D003215 ORTHO05D003735 2.2e-08 64.7 107 35.5
Mapoly0091s0012 Marchantia polymorpha HOM05D003215 ORTHO05D003735 5.0e-08 63.5 176 27.3
BolC5t32818H Brassica oleracea HOM05D003215 ORTHO05D003735 2.5e-07 61.2 141 25.5
C05p40730 Brassica napus HOM05D003215 ORTHO05D003735 4.2e-07 60.5 141 25.5
Nitab4.5_0003367g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 1.2e-06 58.9 404 24.5
Oeu020912.1 Olea europaea HOM05D003215 ORTHO05D003735 3.6e-06 57.4 77 36.4


User provided reference genes

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