Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 0.0e+00 1377.8 687 100.0
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1134.0 687 82.0
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 2.0e-273 945.7 688 66.3
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 1.4e-266 922.9 692 64.9
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 1.6e-265 919.5 691 65.1
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 5.0e-264 914.4 694 64.6
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 8.6e-264 913.7 693 64.2
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 2.5e-263 912.1 689 64.7
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 4.3e-263 911.4 709 62.3
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 2.1e-262 909.1 692 63.6
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 3.4e-260 901.7 694 63.8
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 9.8e-260 900.2 692 63.7
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 2.9e-259 898.7 692 63.2
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 6.4e-259 897.5 700 63.4
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 6.4e-259 897.5 692 63.4
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 8.3e-259 897.1 692 63.2
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 8.3e-259 897.1 695 62.4
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 1.1e-258 896.7 690 63.2
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 1.4e-258 896.3 691 63.4
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 3.2e-258 895.2 695 62.3
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 7.0e-258 894.0 695 62.3
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 1.2e-257 893.3 695 62.2
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 3.5e-257 891.7 693 63.6
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 3.5e-257 891.7 691 62.4
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 4.6e-257 891.3 695 62.2
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 1.7e-256 889.4 695 61.9
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 5.0e-256 887.9 669 64.6
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 6.6e-256 887.5 694 63.0
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 8.6e-256 887.1 693 62.9
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 9.5e-255 883.6 693 61.6
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 1.4e-253 879.8 691 62.5
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.8e-253 879.4 692 61.7
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 3.1e-253 878.6 692 61.1
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 2.0e-252 875.9 693 62.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 2.6e-252 875.5 693 62.0
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 3.7e-251 871.7 692 61.7
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 1.1e-250 870.2 692 61.6
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 4.1e-250 868.2 692 61.6
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 5.4e-250 867.8 693 60.2
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 7.1e-250 867.5 693 61.5
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 9.2e-250 867.1 694 61.1
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 9.2e-250 867.1 689 61.4
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 1.2e-249 866.7 691 61.1
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 1.2e-249 866.7 691 61.2
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 1.6e-249 866.3 694 61.0
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 2.7e-249 865.5 693 60.6
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 3.5e-249 865.1 693 61.3
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 4.6e-249 864.8 691 61.4
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 4.6e-249 864.8 691 60.8
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 4.6e-249 864.8 693 60.6
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 4.6e-249 864.8 693 60.6
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 6.0e-249 864.4 689 62.0
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 1.0e-248 863.6 693 60.6
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 1.0e-248 863.6 692 60.8
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 1.3e-248 863.2 698 61.2
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 1.3e-248 863.2 693 60.9
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 1.3e-248 863.2 693 61.3
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 3.0e-248 862.1 693 60.5
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 3.0e-248 862.1 693 60.8
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 3.0e-248 862.1 692 60.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 5.1e-248 861.3 693 60.5
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 5.1e-248 861.3 689 61.2
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 1.1e-247 860.1 693 60.9
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 1.1e-247 860.1 692 60.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 1.5e-247 859.8 694 61.0
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 5.6e-247 857.8 692 61.4
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 7.3e-247 857.4 689 61.4
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 9.5e-247 857.1 694 60.4
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 1.6e-246 856.3 692 59.4
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 2.1e-246 855.9 693 60.6
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 4.7e-246 854.7 689 61.8
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 6.2e-246 854.4 694 60.4
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 1.4e-245 853.2 686 60.9
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 1.4e-245 853.2 693 60.8
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 1.4e-245 853.2 694 60.8
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 4.0e-245 851.7 692 60.7
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 4.0e-245 851.7 693 60.5
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 4.9e-243 844.7 690 59.7
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 6.4e-243 844.3 740 57.4
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 1.9e-242 842.8 639 64.6
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.1e-242 841.6 695 60.3
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 2.3e-240 835.9 744 56.2
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 8.6e-240 833.9 691 59.3
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 1.9e-239 832.8 719 57.7
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 3.3e-239 832.0 645 63.3
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 4.3e-239 831.6 689 60.5
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 1.1e-237 827.0 692 59.1
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 2.4e-237 825.9 773 54.7
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 3.2e-234 815.5 691 57.9
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 5.4e-234 814.7 710 58.7
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 5.6e-231 804.7 638 61.9
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 2.8e-230 802.4 691 57.5
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 1.9e-226 789.6 711 56.5
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 2.1e-225 786.2 693 57.3
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.1e-224 781.6 615 62.4
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 1.1e-223 780.4 692 56.8
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 2.1e-222 776.2 693 57.4
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 1.7e-219 766.5 695 56.7
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 1.2e-217 760.4 822 49.4
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 3.1e-213 745.7 691 55.0
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 3.8e-203 712.2 551 64.2
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 3.6e-185 652.5 498 65.3
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 2.6e-180 636.3 523 60.6
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 2.4e-157 560.1 717 42.8
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.7e-156 556.6 441 65.1
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 6.8e-152 542.0 701 45.5
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.5e-151 540.8 700 40.7
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.0e-147 525.8 733 39.4
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 8.6e-147 525.0 717 40.6
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 1.6e-145 520.8 714 39.8
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 2.8e-145 520.0 690 41.9
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.5e-138 497.7 699 39.1
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 2.5e-138 496.9 714 38.8
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.2e-127 461.5 748 36.8
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 2.2e-118 430.6 694 35.3
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 1.3e-102 378.3 317 63.1
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 4.2e-85 320.1 245 68.6
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.6e-84 316.6 301 52.2
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.9e-82 311.2 383 47.0
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.9e-82 311.2 231 58.4
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.5e-82 310.8 524 39.3
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.8e-70 270.4 292 53.1
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 4.7e-60 236.9 709 27.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 6.1e-60 236.5 166 63.3
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.2e-59 233.4 240 46.2
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 2.6e-58 231.1 171 66.1
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 5.4e-32 143.7 648 24.2
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.4e-32 143.7 145 49.0
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 5.6e-29 133.7 169 43.2
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 8.3e-25 119.8 629 23.4
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.4e-19 102.4 719 20.2
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 3.2e-16 91.3 94 47.9
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 5.4e-16 90.5 64 68.8
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 8.1e-12 76.6 60 66.7


User provided reference genes

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