Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0295000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.2e-234 816.2 435 100.0
Os06g0294200 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.3e-152 542.3 412 71.8
Zm00001eb012560 Zea mays HOM05D008828 ORTHO05D011223 9.1e-94 348.2 457 49.5
Os06g0296700 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.9e-91 340.5 415 50.6
Os06g0294000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 7.2e-83 312.0 422 46.0
Os06g0294400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 7.7e-77 292.0 451 43.7
Os06g0296100 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.3e-75 286.6 440 43.2
Zm00001eb380900 Zea mays HOM05D008828 ORTHO05D011223 2.8e-74 283.5 413 44.6
Os06g0297400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.4e-70 271.2 451 41.0
Os11g0144900 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 9.2e-70 268.5 407 45.0
Zm00001eb196540 Zea mays HOM05D008828 ORTHO05D011223 8.0e-66 255.4 433 40.2
Zm00001eb281010 Zea mays HOM05D008828 ORTHO05D011223 1.4e-65 254.6 472 38.6
Os06g0293500 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.3e-63 248.1 439 42.1
Os06g0296900 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.0e-60 238.4 469 39.9
Zm00001eb166220 Zea mays HOM05D008828 ORTHO05D011223 1.5e-59 234.6 414 40.8
Os11g0682000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 7.3e-59 232.3 393 36.1
Os06g0291800 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 8.1e-58 228.8 429 35.0
Os11g0220500 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.4e-56 223.4 392 35.7
Os06g0295300 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 5.8e-56 222.6 436 36.0
Os06g0292100 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.6e-53 214.5 454 36.3
Zm00001eb381380 Zea mays HOM05D008828 ORTHO05D011223 1.3e-52 211.5 281 45.6
Zm00001eb367720 Zea mays HOM05D008828 ORTHO05D011223 3.9e-52 209.9 398 35.7
Os06g0297300 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 2.1e-50 204.1 422 36.0
Zm00001eb280980 Zea mays HOM05D008828 ORTHO05D011223 3.4e-48 196.8 470 30.6
Os06g0292400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 2.7e-45 187.2 427 31.6
Os06g0293100 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.0e-44 185.3 346 40.5
Os06g0293000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 6.8e-41 172.6 291 42.3
Os12g0141000 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.4e-40 169.9 216 48.1
Zm00001eb028300 Zea mays HOM05D008828 ORTHO05D011223 6.9e-33 146.0 261 38.3
Zm00001eb021910 Zea mays HOM05D008828 ORTHO05D011223 6.0e-29 132.9 323 32.8
Zm00001eb280880 Zea mays HOM05D008828 ORTHO05D011223 5.1e-28 129.8 149 51.0
Os06g0285900 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 3.1e-25 120.6 137 48.9
Zm00001eb361920 Zea mays HOM05D008828 ORTHO05D000291 2.4e-22 110.9 132 47.7
Zm00001eb321940 Zea mays HOM05D008828 ORTHO05D011223 3.0e-20 104.0 191 37.7
Zm00001eb380810 Zea mays HOM05D008828 ORTHO05D000291 9.6e-19 99.0 139 38.1
Zm00001eb380790 Zea mays HOM05D008828 ORTHO05D000291 1.6e-18 98.2 134 41.0
Os06g0286146 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D000291 4.8e-18 96.7 139 38.1
Os11g0220600 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 4.5e-16 90.1 129 43.4
Os04g0168400 Oryza sativa ssp. japonica HOM05D008828 ORTHO05D011223 1.4e-14 85.1 164 37.8
Rhsim01G0141700 Rhododendron simsii HOM05D000448 ORTHO05D000291 4.8e-10 70.1 246 28.9
CSS0002364 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.4e-09 67.8 183 30.1
CSS0023530 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.4e-09 67.8 183 30.1
CSS0013072 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 9.0e-09 65.9 154 33.1
CSS0045842 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 9.0e-09 65.9 154 33.1
Eucgr.B00705 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.0e-08 64.7 136 27.2
Eucgr.C00701 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.4e-08 63.9 80 36.2
Eucgr.E02804 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.4e-08 63.9 120 28.3
Lj1A658G6 Lonicera japonica HOM05D000448 ORTHO05D000291 3.4e-08 63.9 113 35.4
MBI14_g34694_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 3.4e-08 63.9 74 39.2
PGR031G3266 Punica granatum HOM05D000448 ORTHO05D000291 4.5e-08 63.5 138 34.1
GSVIVG01015136001 Vitis vinifera HOM05D000448 ORTHO05D000291 4.5e-08 63.5 84 38.1
Zm00001eb381390 Zea mays HOM05D008828 ORTHO05D011223 4.5e-08 63.5 155 31.6
CSS0028482 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.0e-07 62.4 144 32.6
Eucgr.C03371 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.0e-07 62.4 94 36.2
MBI14_g45558_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.3e-07 62.0 129 27.9
Eucgr.C00702 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.7e-07 61.6 80 37.5
MBI14_g39031_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.7e-07 61.6 101 31.7
Sc09g0010010 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.7e-07 61.6 80 38.8
Atru.chr7.1898 Acer truncatum HOM05D000448 ORTHO05D000291 2.2e-07 61.2 148 31.8
CSS0044549 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.2e-07 61.2 79 39.2
Eucgr.C01650 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.2e-07 61.2 125 32.0
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.2e-07 61.2 85 44.7
CSS0014567 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.9e-07 60.8 107 32.7
Migut.A00096 Erythranthe guttata HOM05D000448 ORTHO05D000291 2.9e-07 60.8 155 28.4
Sed0015187 Sechium edule HOM05D000448 ORTHO05D000291 2.9e-07 60.8 93 34.4
CiPaw.03G111800 Carya illinoinensis HOM05D000448 ORTHO05D000291 5.0e-07 60.1 89 36.0
Eucgr.C01885 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.0e-07 60.1 114 28.9
Sabra14G0038100 Salix brachista HOM05D000448 ORTHO05D000291 5.0e-07 60.1 112 33.9
EL10Ac2g04009 Beta vulgaris HOM05D000448 ORTHO05D000291 6.5e-07 59.7 58 41.4
CSS0037448 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 6.5e-07 59.7 107 32.7
Eucgr.C00694 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.5e-07 59.7 113 29.2
Oeu016084.1 Olea europaea HOM05D000448 ORTHO05D000291 6.5e-07 59.7 105 32.4
PGR031G0346 Punica granatum HOM05D000448 ORTHO05D000291 6.5e-07 59.7 138 34.1
Sc23g0005360 Simmondsia chinensis HOM05D000448 ORTHO05D000291 6.5e-07 59.7 79 39.2
Gorai.010G043800 Gossypium raimondii HOM05D000448 ORTHO05D000291 8.4e-07 59.3 117 34.2
Hma1.2p1_0732F.1_g210020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 8.4e-07 59.3 89 32.6
EL10Ac2g04012 Beta vulgaris HOM05D000448 ORTHO05D000291 1.1e-06 58.9 58 41.4
Duzib133G0800 Durio zibethinus HOM05D000448 ORTHO05D000291 1.1e-06 58.9 86 37.2
Manes.01G088000 Manihot esculenta HOM05D000480 ORTHO05D000313 1.1e-06 58.9 63 47.6
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 1.1e-06 58.9 124 32.3
Rhsim13G0216300 Rhododendron simsii HOM05D000448 ORTHO05D000291 1.1e-06 58.9 140 28.6
SalBow4G1393 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.1e-06 58.9 117 30.8
SGA_v2.0_scaffold20G09213 Striga asiatica HOM05D000448 ORTHO05D000291 1.1e-06 58.9 152 29.6
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 1.4e-06 58.5 80 38.8
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 1.4e-06 58.5 75 46.7
Ciclev10008164m.g Citrus clementina HOM05D000448 ORTHO05D000291 1.9e-06 58.2 91 35.2
Gohir.D06G039500 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.9e-06 58.2 117 34.2
CiPaw.03G112000 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.5e-06 57.8 80 37.5
Gohir.A06G037850 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.5e-06 57.8 70 41.4
Gorai.010G043700 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.5e-06 57.8 118 32.2
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 2.5e-06 57.8 77 44.2
Actinidia25704 Actinidia chinensis HOM05D000448 ORTHO05D000291 3.2e-06 57.4 121 34.7
MSTRG.12047 Avicennia marina HOM05D000448 ORTHO05D000291 3.2e-06 57.4 109 32.1
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.2e-06 57.4 40 62.5
Sc23g0005320 Simmondsia chinensis HOM05D000448 ORTHO05D000291 3.2e-06 57.4 77 37.7
Actinidia03310 Actinidia chinensis HOM05D000448 ORTHO05D000291 4.2e-06 57.0 105 33.3
Cfa007125 Carpinus fangiana HOM05D000448 ORTHO05D000291 4.2e-06 57.0 152 29.6
CiPaw.13G024500 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.2e-06 57.0 44 54.5
Cc08_g01450 Coffea canephora HOM05D000448 ORTHO05D000291 4.2e-06 57.0 79 39.2
Duzib168G2346 Durio zibethinus HOM05D000448 ORTHO05D000291 4.2e-06 57.0 115 28.7
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 4.2e-06 57.0 77 40.3
Lsat_1_v5_gn_5_78760 Lactuca sativa HOM05D000448 ORTHO05D000291 4.2e-06 57.0 77 37.7
Os01g0254400 Oryza sativa ssp. japonica HOM05D018150 ORTHO05D020928 4.2e-06 57.0 126 33.3
vmacro03798 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 4.2e-06 57.0 105 33.3
vmacro03799 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 4.2e-06 57.0 108 33.3
Zm00001eb127710 Zea mays HOM05D018150 ORTHO05D020928 4.2e-06 57.0 74 41.9
Actinidia38517 Actinidia chinensis HOM05D000448 ORTHO05D000291 5.5e-06 56.6 74 39.2
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 5.5e-06 56.6 75 44.0
Gorai.008G110200 Gossypium raimondii HOM05D000448 ORTHO05D000291 5.5e-06 56.6 40 57.5
CSS0021116 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 7.2e-06 56.2 165 26.1
Cc06_g19870 Coffea canephora HOM05D000448 ORTHO05D000291 7.2e-06 56.2 86 37.2
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 7.2e-06 56.2 249 29.3
Eucgr.L00439 Eucalyptus grandis HOM05D000448 ORTHO05D000291 7.2e-06 56.2 119 31.9
MBI14_g28629_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 7.2e-06 56.2 140 30.7
Peaxi162Scf00565g00821 Petunia axillaris HOM05D000448 ORTHO05D000291 7.2e-06 56.2 80 37.5
CiPaw.03G112400 Carya illinoinensis HOM05D000448 ORTHO05D000291 9.3e-06 55.8 98 30.6
AUR62043589 Chenopodium quinoa HOM05D000448 ORTHO05D000291 9.3e-06 55.8 58 39.7
AUR62044748 Chenopodium quinoa HOM05D000448 ORTHO05D000291 9.3e-06 55.8 58 39.7
Cc08_g01440 Coffea canephora HOM05D000448 ORTHO05D000291 9.3e-06 55.8 91 34.1
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 9.3e-06 55.8 75 44.0
Lj1A658T5 Lonicera japonica HOM05D000448 ORTHO05D000291 9.3e-06 55.8 117 32.5
Oeu047500.1 Olea europaea HOM05D000448 ORTHO05D000291 9.3e-06 55.8 105 28.6
Sopen08g017860 Solanum pennellii HOM05D000448 ORTHO05D000291 9.3e-06 55.8 83 36.1
PGSC0003DMG400013763 Solanum tuberosum HOM05D000448 ORTHO05D000291 9.3e-06 55.8 80 37.5
THA.LOC104799245 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 9.3e-06 55.8 43 62.8
vmacro03797 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 9.3e-06 55.8 105 32.4


User provided reference genes

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