Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.0e-210 735.7 420 100.0
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 5.2e-155 551.6 400 74.2
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 8.8e-94 348.2 389 50.4
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 2.2e-92 343.6 393 51.4
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.1e-91 341.3 404 47.3
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.4e-91 340.9 386 50.5
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.9e-88 330.5 404 47.8
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 6.7e-86 322.0 400 48.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 8.8e-86 321.6 397 46.9
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 9.7e-85 318.2 397 47.9
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 1.7e-84 317.4 397 47.6
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 4.8e-84 315.8 317 52.7
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 6.3e-84 315.5 409 45.7
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 8.2e-84 315.1 397 46.6
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.4e-83 314.3 381 46.7
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.1e-83 313.2 406 46.8
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 5.3e-83 312.4 382 46.9
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 5.3e-83 312.4 388 49.0
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 7.0e-83 312.0 407 44.7
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 9.1e-83 311.6 404 47.3
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 3.5e-82 309.7 382 46.3
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 1.7e-81 307.4 381 48.6
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 5.0e-81 305.8 394 46.7
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 8.5e-81 305.1 396 46.5
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 1.1e-80 304.7 388 46.9
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 3.2e-80 303.1 387 46.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.5e-80 302.4 410 47.8
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 5.5e-80 302.4 328 50.9
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.6e-79 300.8 396 46.0
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 2.1e-79 300.4 382 46.6
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 4.7e-79 299.3 394 44.2
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 6.1e-79 298.9 383 47.0
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.4e-78 297.7 375 46.9
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 1.4e-78 297.7 397 44.8
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 1.8e-78 297.4 347 46.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 3.0e-78 296.6 405 47.7
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 3.0e-78 296.6 378 45.5
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 1.5e-77 294.3 406 44.6
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 1.5e-77 294.3 376 48.9
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 1.5e-77 294.3 386 48.2
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 2.0e-77 293.9 398 44.0
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 2.0e-77 293.9 404 45.3
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 3.4e-77 293.1 389 47.8
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 5.7e-77 292.4 387 47.3
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 7.5e-77 292.0 394 45.9
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 7.5e-77 292.0 394 45.9
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 9.8e-77 291.6 387 47.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 1.7e-76 290.8 385 44.9
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 1.7e-76 290.8 386 45.9
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 3.7e-76 289.7 326 46.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 6.3e-76 288.9 404 44.3
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 8.3e-76 288.5 386 45.9
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 8.3e-76 288.5 406 42.1
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 8.3e-76 288.5 400 45.2
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 1.8e-75 287.3 396 45.2
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 7.0e-75 285.4 393 45.8
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 3.5e-74 283.1 372 44.6
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 4.5e-74 282.7 391 47.3
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 4.5e-74 282.7 390 44.9
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 7.7e-74 282.0 373 45.8
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 1.0e-73 281.6 397 44.8
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 1.7e-73 280.8 365 47.4
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 1.7e-73 280.8 332 48.8
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 2.9e-73 280.0 399 41.6
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 3.8e-73 279.6 396 42.9
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 3.8e-73 279.6 396 42.9
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.8e-73 279.6 396 42.9
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 6.5e-73 278.9 371 46.6
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 8.6e-73 278.5 385 45.5
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 2.5e-72 276.9 400 40.8
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 7.2e-72 275.4 399 41.4
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 9.5e-72 275.0 380 44.7
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 1.6e-71 274.2 380 44.5
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.6e-71 274.2 395 42.5
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 2.1e-71 273.9 389 43.4
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 2.8e-71 273.5 383 43.3
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 4.7e-71 272.7 380 44.5
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.8e-70 270.8 400 42.5
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 1.8e-70 270.8 400 41.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 5.2e-70 269.2 397 43.1
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 6.8e-70 268.9 400 42.2
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 6.8e-70 268.9 400 42.2
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 6.8e-70 268.9 407 41.5
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 6.8e-70 268.9 394 42.6
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 8.9e-70 268.5 379 43.5
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 3.7e-68 263.1 297 49.2
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 8.3e-68 261.9 397 42.3
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.4e-67 260.4 281 48.4
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 5.0e-65 252.7 400 44.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.8e-63 246.9 299 45.8
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.5e-61 241.1 345 43.2
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 2.4e-59 233.8 374 40.6
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.1e-51 206.5 220 50.9
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.3e-49 201.4 243 47.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.5e-48 198.0 292 41.1
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 5.2e-46 189.5 320 40.0
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.4e-43 180.6 266 48.1
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.8e-42 175.6 213 46.0
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 5.6e-40 169.5 282 38.7
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 5.6e-40 169.5 373 33.0
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.4e-38 164.1 258 43.4
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 5.8e-37 159.5 268 37.7
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 3.3e-32 143.7 125 56.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.3e-28 131.7 258 35.3
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-28 129.8 305 31.1
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 4.9e-28 129.8 114 55.3
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.6e-26 124.8 107 54.2
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.6e-26 123.2 107 53.3
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.3e-24 117.1 277 34.3
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 8.1e-23 112.5 120 45.8
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 3.2e-19 100.5 120 44.2
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.2e-13 82.0 89 46.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.6e-07 61.6 225 30.2


User provided reference genes

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