Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0251000 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007277 3.1e-67 258.5 141 100.0
Zm00001eb280220 Zea mays HOM05D002544 ORTHO05D007277 5.6e-45 184.5 133 75.9
AT5G37530 Arabidopsis thaliana HOM05D002544 ORTHO05D007277 6.7e-30 134.4 131 57.3
THA.LOC104823837 Tarenaya hassleriana HOM05D002544 ORTHO05D007277 1.9e-29 132.9 133 59.4
AL7G46290 Arabidopsis lyrata HOM05D002544 ORTHO05D007277 3.3e-29 132.1 131 55.0
QL02p059524 Quercus lobata HOM05D002544 ORTHO05D007277 3.3e-29 132.1 138 56.5
Carub.0007s3270 Capsella rubella HOM05D002544 ORTHO05D007277 4.3e-29 131.7 131 56.5
Hma1.2p1_1443F.1_g283880 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 7.4e-29 131.0 138 59.4
A04p10670 Brassica napus HOM05D002544 ORTHO05D007277 2.8e-28 129.0 131 55.0
Sc04g0005090 Simmondsia chinensis HOM05D002544 ORTHO05D007277 2.8e-28 129.0 131 55.0
Lj2C517G4 Lonicera japonica HOM05D002544 ORTHO05D007277 3.7e-28 128.6 137 58.4
QL03p020238 Quercus lobata HOM05D002544 ORTHO05D007277 3.7e-28 128.6 138 56.5
BcaC02g09580 Brassica carinata HOM05D002544 ORTHO05D007277 4.8e-28 128.3 137 55.5
C04p44390 Brassica napus HOM05D002544 ORTHO05D007277 4.8e-28 128.3 137 55.5
LjContig00141g0018139 Lotus japonicus HOM05D002544 ORTHO05D007277 4.8e-28 128.3 129 55.8
Cc07_g13180 Coffea canephora HOM05D002544 ORTHO05D007277 6.3e-28 127.9 139 56.1
BraA04t16734Z Brassica rapa HOM05D002544 ORTHO05D007277 8.2e-28 127.5 137 53.3
CiPaw.03G074400 Carya illinoinensis HOM05D002544 ORTHO05D007277 8.2e-28 127.5 132 56.8
EL10Ac5g11231 Beta vulgaris HOM05D002544 ORTHO05D007277 1.1e-27 127.1 140 52.1
FAN26G0021 Fragaria x ananassa HOM05D002544 ORTHO05D007277 1.4e-27 126.7 130 57.7
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.4e-27 126.7 140 55.7
Sp7g04620 Schrenkiella parvula HOM05D002544 ORTHO05D007277 1.8e-27 126.3 131 54.2
VMungo0647G0515 Vigna mungo HOM05D002544 ORTHO05D007277 2.4e-27 125.9 130 55.4
CAN.G733.10 Capsicum annuum HOM05D002544 ORTHO05D007277 3.1e-27 125.6 133 57.1
Sopen05g029600 Solanum pennellii HOM05D002544 ORTHO05D007277 4.1e-27 125.2 131 55.7
CANSAT54G1265 Cannabis sativa HOM05D002544 ORTHO05D007277 5.3e-27 124.8 136 54.4
MSTRG.15655 Avicennia marina HOM05D002544 ORTHO05D007277 6.9e-27 124.4 133 57.1
BcaB06g27087 Brassica carinata HOM05D002544 ORTHO05D007277 6.9e-27 124.4 137 54.7
Migut.K00934 Erythranthe guttata HOM05D002544 ORTHO05D007277 6.9e-27 124.4 133 55.6
Glyma.14G212800 Glycine max HOM05D002544 ORTHO05D007277 6.9e-27 124.4 129 55.0
Phvul.008G237900 Phaseolus vulgaris HOM05D002544 ORTHO05D007277 6.9e-27 124.4 129 55.8
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 6.9e-27 124.4 154 52.6
FvH4_1g29991 Fragaria vesca HOM05D002544 ORTHO05D007277 9.1e-27 124.0 134 56.0
Medtr5g077840 Medicago truncatula HOM05D002544 ORTHO05D007277 1.2e-26 123.6 128 56.2
Solyc05g051230.4 Solanum lycopersicum HOM05D002544 ORTHO05D007277 1.2e-26 123.6 131 55.0
ATR0021G008 Amborella trichopoda HOM05D002544 ORTHO05D007277 2.0e-26 122.9 134 54.5
Aqoxy3G04065 Aquilegia oxysepala HOM05D002544 ORTHO05D007277 2.0e-26 122.9 138 55.1
Potri.004G083200 Populus trichocarpa HOM05D002544 ORTHO05D007277 2.0e-26 122.9 139 57.6
Nitab4.5_0010055g0010 Nicotiana tabacum HOM05D002544 ORTHO05D007277 2.6e-26 122.5 132 56.1
Hund02530 Selenicereus undatus HOM05D002544 ORTHO05D007277 2.6e-26 122.5 145 51.0
COL.COLO4_11381 Corchorus olitorius HOM05D002544 ORTHO05D007277 3.4e-26 122.1 125 55.2
Glyma.02G243700 Glycine max HOM05D002544 ORTHO05D007277 3.4e-26 122.1 129 55.8
Manes.17G002000 Manihot esculenta HOM05D002544 ORTHO05D007277 3.4e-26 122.1 140 55.7
PSO063G7385 Papaver somniferum HOM05D002544 ORTHO05D007277 4.5e-26 121.7 130 54.6
arahy.Tifrunner.gnm1.ann1.F4VH9C Arachis hypogaea HOM05D002544 ORTHO05D007277 5.9e-26 121.3 128 54.7
HanXRQChr16g0532851 Helianthus annuus HOM05D002544 ORTHO05D007277 5.9e-26 121.3 140 52.1
Actinidia17195 Actinidia chinensis HOM05D002544 ORTHO05D007277 7.7e-26 120.9 141 56.0
arahy.Tifrunner.gnm1.ann1.8QPJ7C Arachis hypogaea HOM05D002544 ORTHO05D007277 7.7e-26 120.9 128 54.7
arahy.Tifrunner.gnm1.ann1.N8969K Arachis hypogaea HOM05D002544 ORTHO05D007277 7.7e-26 120.9 128 54.7
Ca_26386_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 7.7e-26 120.9 130 55.4
RcHm_v2.0_Chr3g0492321 Rosa chinensis HOM05D002544 ORTHO05D007277 7.7e-26 120.9 142 53.5
Ah.11g047270 Amaranthus hybridus HOM05D002544 ORTHO05D007277 1.0e-25 120.6 138 52.9
arahy.Tifrunner.gnm1.ann1.Y37JRT Arachis hypogaea HOM05D002544 ORTHO05D007277 1.3e-25 120.2 128 54.7
AUR62032172 Chenopodium quinoa HOM05D002544 ORTHO05D007277 1.3e-25 120.2 141 53.2
SalBow5G3645 Salvia bowleyana HOM05D002544 ORTHO05D007277 1.3e-25 120.2 139 53.2
MD09G1267400 Malus domestica HOM05D002544 ORTHO05D007277 1.7e-25 119.8 140 55.0
PSO421G0270 Papaver somniferum HOM05D002544 ORTHO05D007277 2.2e-25 119.4 128 54.7
TAR374G1249 Trochodendron aralioides HOM05D002544 ORTHO05D007277 2.2e-25 119.4 129 57.4
vmacro20588 Vaccinium macrocarpon HOM05D002544 ORTHO05D007277 2.2e-25 119.4 132 55.3
GSVIVG01015995001 Vitis vinifera HOM05D002544 ORTHO05D007277 2.2e-25 119.4 140 52.9
Ca_22253_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 2.9e-25 119.0 127 56.7
Eucgr.F02880 Eucalyptus grandis HOM05D002544 ORTHO05D007277 2.9e-25 119.0 138 52.9
Prupe.3G165000 Prunus persica HOM05D002544 ORTHO05D007277 2.9e-25 119.0 133 54.1
BolC4t26010H Brassica oleracea HOM05D002544 ORTHO05D007277 3.8e-25 118.6 131 54.2
Hma1.2p1_1443F.1_g283890 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 3.8e-25 118.6 72 83.3
Nitab4.5_0000777g0030 Nicotiana tabacum HOM05D002544 ORTHO05D007277 3.8e-25 118.6 131 52.7
PGSC0003DMG401014608 Solanum tuberosum HOM05D002544 ORTHO05D007277 3.8e-25 118.6 126 58.7
FAN28G1946 Fragaria x ananassa HOM05D002544 ORTHO05D007277 5.0e-25 118.2 95 68.4
PGR004G1667 Punica granatum HOM05D002544 ORTHO05D007277 5.0e-25 118.2 145 52.4
Thecc.04G063800 Theobroma cacao HOM05D002544 ORTHO05D007277 5.0e-25 118.2 131 52.7
CSS0009784 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 6.5e-25 117.9 131 53.4
Peaxi162Scf00424g00516 Petunia axillaris HOM05D002544 ORTHO05D007277 6.5e-25 117.9 97 68.0
CSS0024967 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 8.5e-25 117.5 131 53.4
Gohir.D11G175100 Gossypium hirsutum HOM05D002544 ORTHO05D007277 8.5e-25 117.5 125 53.6
Gorai.007G187700 Gossypium raimondii HOM05D002544 ORTHO05D007277 8.5e-25 117.5 125 53.6
TWI74G0587 Tripterygium wilfordii HOM05D002544 ORTHO05D007277 8.5e-25 117.5 125 56.8
Gohir.A11G168900 Gossypium hirsutum HOM05D002544 ORTHO05D007277 1.1e-24 117.1 125 52.8
Lalb_Chr04g0251431 Lupinus albus HOM05D002544 ORTHO05D007277 1.1e-24 117.1 129 55.0
Atru.chr1.2027 Acer truncatum HOM05D002544 ORTHO05D007277 1.4e-24 116.7 134 53.0
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 1.4e-24 116.7 131 56.5
Lsat_1_v5_gn_3_64121 Lactuca sativa HOM05D002544 ORTHO05D007277 1.4e-24 116.7 132 55.3
HPP92_021315 Vanilla planifolia HOM05D002544 ORTHO05D007277 1.4e-24 116.7 146 48.6
Cpa.g.sc116.80 Carica papaya HOM05D002544 ORTHO05D007277 1.9e-24 116.3 71 83.1
Haze_14287 Corylus avellana HOM05D002544 ORTHO05D007277 1.9e-24 116.3 71 83.1
CDE05G0883 Ceratophyllum demersum HOM05D002544 ORTHO05D007277 2.5e-24 115.9 139 51.8
Duzib138G1710 Durio zibethinus HOM05D002544 ORTHO05D007277 2.5e-24 115.9 122 54.1
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 2.5e-24 115.9 142 54.9
Hma1.2p1_1214F.1_g267540 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 2.5e-24 115.9 67 86.6
Sed0005203 Sechium edule HOM05D002544 ORTHO05D007277 4.2e-24 115.2 137 51.1
MBI13_g24910_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007277 7.2e-24 114.4 105 62.9
Aa31LG9G17540 Aethionema arabicum HOM05D002544 ORTHO05D007277 1.6e-23 113.2 90 68.9
FAN19G1253 Fragaria x ananassa HOM05D002544 ORTHO05D007277 1.6e-23 113.2 95 66.3
DCAR_010067 Daucus carota HOM05D002544 ORTHO05D007277 2.1e-23 112.8 88 67.0
ClCG05G002460 Citrullus lanatus HOM05D002544 ORTHO05D007277 3.0e-22 109.0 137 53.3
SHI30127 Sapria himalayana HOM05D002544 ORTHO05D007277 2.0e-21 106.3 66 80.3
SEGI_40484 Sequoiadendron giganteum HOM05D002544 ORTHO05D007277 3.3e-21 105.5 69 75.4
MELO3C006210.2 Cucumis melo HOM05D002544 ORTHO05D007277 4.4e-21 105.1 80 71.2
AagrBONN_evm.TU.Sc2ySwM_228.346 Anthoceros agrestis HOM05D002544 ORTHO05D007277 1.7e-20 103.2 127 50.4
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.1e-19 99.0 189 40.2
SMO367G0951 Selaginella moellendorffii HOM05D002544 ORTHO05D007277 3.1e-19 99.0 65 69.2
Pp3c14_20390 Physcomitrium patens HOM05D002544 ORTHO05D007277 4.1e-19 98.6 144 45.8
Cre03.g159400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007277 1.2e-18 97.1 130 45.4
Ciclev10003868m.g Citrus clementina HOM05D002544 ORTHO05D007277 1.2e-18 97.1 56 83.9
SHI21777 Sapria himalayana HOM05D002544 ORTHO05D007277 1.5e-18 96.7 62 77.4
MCO01G178 Micromonas commoda HOM05D002544 ORTHO05D007277 1.0e-17 94.0 65 69.2
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 2.2e-17 92.8 123 47.2
Gorai.013G132900 Gossypium raimondii HOM05D002544 ORTHO05D007277 2.9e-17 92.4 59 74.6
Mapoly0047s0092 Marchantia polymorpha HOM05D002544 ORTHO05D007277 3.8e-17 92.0 70 62.9
TPR.G23661 Trifolium pratense HOM05D002544 ORTHO05D007277 3.8e-17 92.0 63 69.8
Gohir.D13G118500 Gossypium hirsutum HOM05D002544 ORTHO05D007277 3.2e-16 89.0 51 86.3
Gohir.D01G158101 Gossypium hirsutum HOM05D002544 ORTHO05D007277 5.5e-16 88.2 51 84.3
Gorai.009G336200 Gossypium raimondii HOM05D000894 ORTHO05D007277 9.4e-16 87.4 50 86.0
Gohir.D11G220600 Gossypium hirsutum HOM05D002544 ORTHO05D007277 2.7e-15 85.9 51 82.4
CBR_g12327 Chara braunii HOM05D002544 ORTHO05D007277 2.0e-10 69.7 63 52.4
CARHR215380 Cardamine hirsuta HOM05D002544 ORTHO05D007277 7.7e-10 67.8 39 84.6
unitig_32.g10721 Utricularia gibba HOM05D002544 ORTHO05D007277 2.1e-07 59.7 91 46.2


User provided reference genes

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