Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 0.0e+00 1340.9 676 100.0
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 1.7e-211 740.0 677 60.4
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 7.8e-84 315.8 568 36.4
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 8.1e-81 305.8 480 37.5
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 2.3e-80 304.3 579 35.4
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.2e-79 302.0 558 34.2
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 1.1e-74 285.4 569 34.8
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 1.1e-74 285.4 566 34.3
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.9e-74 284.6 569 33.0
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 3.3e-74 283.9 566 35.9
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 7.3e-74 282.7 569 33.2
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 2.8e-73 280.8 570 34.4
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 3.6e-73 280.4 573 33.5
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 6.2e-73 279.6 572 33.7
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 1.1e-72 278.9 575 34.1
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 5.2e-72 276.6 567 34.4
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 6.8e-72 276.2 555 33.7
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 1.5e-71 275.0 555 33.2
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.6e-71 274.2 571 33.5
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 3.4e-71 273.9 558 33.7
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 5.8e-71 273.1 714 30.3
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 9.9e-71 272.3 592 34.0
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 2.2e-70 271.2 562 34.2
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 3.7e-70 270.4 565 32.0
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 1.1e-69 268.9 570 32.5
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 1.9e-69 268.1 570 33.7
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 3.2e-69 267.3 574 31.9
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 3.2e-69 267.3 568 33.1
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 4.1e-69 266.9 575 34.3
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 7.1e-69 266.2 387 38.8
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 9.2e-69 265.8 581 32.4
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 9.2e-69 265.8 567 32.3
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.2e-68 265.4 568 33.3
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 1.6e-68 265.0 571 32.6
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 6.0e-68 263.1 572 33.4
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 6.0e-68 263.1 644 31.5
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 1.3e-67 261.9 634 31.1
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 2.3e-67 261.2 549 34.2
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 5.1e-67 260.0 592 30.7
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 6.6e-67 259.6 579 31.4
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.1e-66 258.8 577 34.1
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 1.5e-66 258.5 562 30.6
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 2.5e-66 257.7 576 32.1
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.5e-66 257.7 570 33.0
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 2.5e-66 257.7 616 30.4
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 2.8e-65 254.2 579 32.0
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 2.8e-65 254.2 629 31.6
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 3.6e-65 253.8 574 33.4
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 8.1e-65 252.7 574 31.4
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 1.8e-64 251.5 566 30.6
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 1.8e-64 251.5 500 35.6
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 8.9e-64 249.2 586 32.6
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 1.2e-63 248.8 604 31.8
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 1.2e-63 248.8 587 32.0
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.5e-63 248.4 659 30.0
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 4.4e-63 246.9 607 31.6
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 5.8e-63 246.5 582 32.3
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 5.8e-63 246.5 665 29.6
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 5.8e-63 246.5 592 31.1
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 1.3e-62 245.4 580 31.9
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 2.2e-62 244.6 578 32.5
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 8.4e-62 242.7 581 31.8
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 8.4e-62 242.7 600 31.8
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 8.4e-62 242.7 579 31.4
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.4e-61 241.9 614 30.1
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 4.6e-60 236.9 610 31.1
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 6.0e-60 236.5 577 31.5
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 9.6e-58 229.2 262 42.4
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.6e-57 228.4 574 30.0
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 1.6e-57 228.4 668 28.4
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.8e-56 224.9 488 33.0
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 6.9e-56 223.0 551 27.2
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 9.0e-56 222.6 439 35.1
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 1.5e-55 221.9 637 29.4
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 7.6e-55 219.5 416 35.1
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 2.9e-54 217.6 285 39.6
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 4.9e-54 216.9 479 29.9
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 1.9e-53 214.9 546 30.0
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 7.1e-53 213.0 576 29.0
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 7.1e-53 213.0 580 30.0
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.2e-52 212.2 330 37.0
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 1.2e-52 212.2 567 28.9
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.5e-52 210.7 519 33.5
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 3.5e-52 210.7 299 38.8
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.0e-51 209.1 516 33.5
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.3e-51 208.8 582 30.6
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.3e-51 208.0 565 29.9
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 1.1e-50 205.7 432 33.6
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 4.8e-49 200.3 265 43.0
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 2.6e-47 194.5 572 28.7
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.6e-44 185.3 558 29.9
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 2.1e-44 184.9 391 32.0
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 3.9e-43 180.6 233 39.1
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 4.8e-41 173.7 246 38.2
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 8.1e-41 172.9 410 33.2
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 1.1e-40 172.6 544 26.3
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 5.3e-40 170.2 568 26.2
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 3.4e-39 167.5 214 38.8
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 8.4e-38 162.9 575 24.9
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-37 162.5 557 25.7
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 1.1e-37 162.5 444 30.2
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 1.9e-37 161.8 555 25.4
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 4.2e-37 160.6 418 30.6
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 9.3e-37 159.5 561 26.0
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 2.1e-36 158.3 577 25.0
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 3.5e-36 157.5 557 25.5
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.5e-36 157.5 554 25.8
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 6.0e-36 156.8 568 25.4
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 5.1e-35 153.7 544 25.0
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.1e-34 152.5 533 26.1
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 2.5e-34 151.4 558 25.6
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 9.6e-34 149.4 571 24.9
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.6e-33 148.7 569 24.8
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 5.9e-31 140.2 182 40.1
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 1.0e-30 139.4 564 25.5
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 1.6e-28 132.1 249 29.3
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 3.9e-27 127.5 229 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 2.4e-24 118.2 461 24.5
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 6.9e-24 116.7 296 31.4
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 2.0e-23 115.2 237 30.8
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 2.6e-23 114.8 212 30.2
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 5.5e-21 107.1 381 27.3
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 1.6e-20 105.5 230 26.5
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 1.0e-19 102.8 149 36.9
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 3.0e-19 101.3 158 38.0
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 6.7e-19 100.1 154 35.7
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 4.1e-16 90.9 451 23.1
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 1.2e-15 89.4 255 30.6
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 1.0e-14 86.3 145 29.0
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 6.5e-14 83.6 365 26.3
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 1.9e-13 82.0 438 22.4
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 1.9e-13 82.0 139 33.8
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 9.7e-10 69.7 157 30.6
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.3e-09 69.3 123 35.0
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 2.9e-06 58.2 87 34.5


User provided reference genes

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