Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 9.6e-33 143.3 94 100.0
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.5e-19 98.2 93 60.2
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.9e-17 92.4 92 58.7
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 7.2e-12 73.9 73 50.7
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.1e-11 72.4 77 58.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.1e-11 72.4 77 58.4
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 6.1e-11 70.9 74 50.0
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.0e-10 68.6 73 46.6
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 3.0e-10 68.6 73 47.9
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.9e-10 68.2 78 46.2
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 8.8e-10 67.0 71 47.9
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 8.8e-10 67.0 74 45.9
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.1e-09 66.6 79 48.1
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.1e-09 66.6 73 45.2
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 3.3e-09 65.1 76 46.1
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 3.3e-09 65.1 76 47.4
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 5.7e-09 64.3 79 44.3
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 7.4e-09 63.9 70 48.6
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 9.7e-09 63.5 70 47.1
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.3e-08 63.2 78 53.8
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.3e-08 63.2 71 50.7
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.3e-08 63.2 69 46.4
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.7e-08 62.8 75 44.0
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.7e-08 62.8 82 40.2
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.2e-08 62.4 71 46.5
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.2e-08 62.4 76 46.1
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.8e-08 62.0 71 46.5
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 2.8e-08 62.0 73 42.5
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 2.8e-08 62.0 71 43.7
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.7e-08 61.6 77 44.2
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.7e-08 61.6 72 41.7
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.8e-08 61.2 76 44.7
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 6.3e-08 60.8 74 43.2
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 6.3e-08 60.8 71 43.7
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 8.2e-08 60.5 70 45.7
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.1e-07 60.1 70 45.7
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.1e-07 60.1 71 46.5
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.4e-07 59.7 71 43.7
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.8e-07 59.3 74 43.2
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.8e-07 59.3 82 45.1
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.8e-07 59.3 71 42.3
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 2.4e-07 58.9 69 43.5
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.1e-07 58.5 82 45.1
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 3.1e-07 58.5 70 44.3
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.1e-07 58.2 77 42.9
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.1e-07 58.2 77 42.9
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.1e-07 58.2 72 43.1
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 4.1e-07 58.2 69 49.3
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.1e-07 58.2 78 42.3
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.3e-07 57.8 75 45.3
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.3e-07 57.8 73 41.1
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.3e-07 57.8 72 44.4
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 5.3e-07 57.8 67 43.3
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 5.3e-07 57.8 71 43.7
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 9.1e-07 57.0 75 41.3
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 9.1e-07 57.0 79 39.2
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 9.1e-07 57.0 68 45.6
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 9.1e-07 57.0 70 42.9
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 9.1e-07 57.0 71 43.7
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 9.1e-07 57.0 71 42.3
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 9.1e-07 57.0 69 44.9
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.2e-06 56.6 75 41.3
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.2e-06 56.6 70 42.9
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-06 56.2 76 40.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.5e-06 56.2 65 47.7
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.0e-06 55.8 72 38.9
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.0e-06 55.8 82 43.9
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.6e-06 55.5 72 43.1
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.6e-06 55.5 72 43.1
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.6e-06 55.5 72 43.1
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 2.6e-06 55.5 72 43.1
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 3.4e-06 55.1 79 40.5
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.4e-06 55.1 75 42.7
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 3.4e-06 55.1 74 40.5
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.5e-06 54.7 77 39.0
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 5.9e-06 54.3 77 41.6
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 7.7e-06 53.9 68 41.2
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 7.7e-06 53.9 70 41.4


User provided reference genes

Program Settings