Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0215100 Oryza sativa ssp. japonica HOM05D019308 ORTHO05D037137 1.3e-209 733.0 416 100.0
Zm00001eb373100 Zea mays HOM05D019308 ORTHO05D037137 2.5e-77 293.5 425 53.9
Zm00001eb101870 Zea mays HOM05D019308 ORTHO05D030701 1.0e-54 218.4 351 49.3
Os02g0761300 Oryza sativa ssp. japonica HOM05D019308 ORTHO05D037137 4.8e-52 209.5 441 39.7
Zm00001eb193780 Zea mays HOM05D019308 ORTHO05D001767 4.5e-50 203.0 451 39.5
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 3.1e-14 84.0 393 28.8
HPP92_010953 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.3e-12 78.6 293 30.4
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 3.7e-12 77.0 392 28.8
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 3.7e-12 77.0 233 30.5
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 8.3e-12 75.9 446 26.2
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.4e-11 75.1 395 25.3
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 1.9e-11 74.7 252 31.3
Aqoxy6G01410 Aquilegia oxysepala HOM05D001841 ORTHO05D001767 3.2e-11 73.9 254 31.5
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 3.2e-11 73.9 365 28.8
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 4.1e-11 73.6 438 26.9
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 4.1e-11 73.6 382 26.2
Gohir.D02G092900 Gossypium hirsutum HOM05D001841 ORTHO05D001767 7.1e-11 72.8 444 26.4
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 7.1e-11 72.8 265 30.2
TWI56G0311 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 9.2e-11 72.4 277 30.7
PSO675G9020 Papaver somniferum HOM05D001841 ORTHO05D001767 2.1e-10 71.2 344 28.8
Gohir.A03G087800 Gossypium hirsutum HOM05D001841 ORTHO05D001767 7.8e-10 69.3 443 26.2
Eucgr.I01168 Eucalyptus grandis HOM05D001841 ORTHO05D001767 1.3e-09 68.6 418 26.1
HPP92_009515 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.3e-09 68.6 226 31.4
Gorai.005G104600 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.3e-09 67.8 444 25.9
Rhsim07G0231600 Rhododendron simsii HOM05D001841 ORTHO05D001767 2.3e-09 67.8 298 27.2
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 3.0e-09 67.4 194 33.0
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 3.0e-09 67.4 215 31.6
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 3.0e-09 67.4 260 27.3
Prupe.8G119300 Prunus persica HOM05D001841 ORTHO05D001767 3.0e-09 67.4 474 28.1
Eucgr.F00024 Eucalyptus grandis HOM05D001841 ORTHO05D001767 6.6e-09 66.2 316 27.8
Lsat_1_v5_gn_5_113300 Lactuca sativa HOM05D001841 ORTHO05D001767 6.6e-09 66.2 298 28.9
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 6.6e-09 66.2 361 26.9
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 6.6e-09 66.2 367 26.2
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.1e-08 65.5 244 29.9
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 1.5e-08 65.1 465 25.8
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 1.5e-08 65.1 264 34.1
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 1.9e-08 64.7 230 33.9
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 2.5e-08 64.3 270 30.4
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 2.5e-08 64.3 347 28.0
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 3.3e-08 63.9 339 26.0
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 4.3e-08 63.5 402 26.6
Duzib093G1523 Durio zibethinus HOM05D001841 ORTHO05D001767 4.3e-08 63.5 373 26.3
Manes.17G093500 Manihot esculenta HOM05D001841 ORTHO05D001767 4.3e-08 63.5 481 24.5
Nn1g05855 Nelumbo nucifera HOM05D001841 ORTHO05D001767 4.3e-08 63.5 267 30.7
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 7.3e-08 62.8 293 28.7
CDE06G1867 Ceratophyllum demersum HOM05D000370 ORTHO05D001366 1.2e-07 62.0 233 32.2
Cc10_g03940 Coffea canephora HOM05D001841 ORTHO05D001767 1.2e-07 62.0 304 27.0
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 1.2e-07 62.0 244 29.9
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 1.6e-07 61.6 268 30.2
QL02p006055 Quercus lobata HOM05D001841 ORTHO05D001767 2.1e-07 61.2 323 29.1
SEGI_11594 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 2.1e-07 61.2 345 31.0
FAN20G1156 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.8e-07 60.8 472 26.3
Potri.014G034900 Populus trichocarpa HOM05D001841 ORTHO05D001767 2.8e-07 60.8 264 28.8
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 4.7e-07 60.1 368 26.4
Cfa005454 Carpinus fangiana HOM05D001841 ORTHO05D001767 6.2e-07 59.7 475 25.7
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 6.2e-07 59.7 147 33.3
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 6.2e-07 59.7 395 26.1
Carub.0004s0670 Capsella rubella HOM05D001841 ORTHO05D001767 1.1e-06 58.9 306 26.8
FvH4_2g06670 Fragaria vesca HOM05D001841 ORTHO05D001767 1.8e-06 58.2 472 26.1
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.8e-06 58.2 441 24.7
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 1.8e-06 58.2 468 25.2
SalBow6G4282 Salvia bowleyana HOM05D001841 ORTHO05D001767 1.8e-06 58.2 275 29.5
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 1.8e-06 58.2 287 28.6
AT2G15760 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 2.4e-06 57.8 201 27.4
Migut.N02690 Erythranthe guttata HOM05D001841 ORTHO05D001767 2.4e-06 57.8 378 24.9
FAN24G1402 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.4e-06 57.8 472 26.1
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 2.4e-06 57.8 381 25.7
RcHm_v2.0_Chr6g0258711 Rosa chinensis HOM05D001841 ORTHO05D001767 3.1e-06 57.4 353 27.5
HanXRQChr11g0324211 Helianthus annuus HOM05D001841 ORTHO05D001767 4.0e-06 57.0 212 28.8
FAN15G3466 Fragaria x ananassa HOM05D001841 ORTHO05D001767 5.2e-06 56.6 473 26.6
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 5.2e-06 56.6 444 26.1
MSTRG.1330 Avicennia marina HOM05D001841 ORTHO05D001767 6.8e-06 56.2 244 26.6
Gohir.A05G199948 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.8e-06 56.2 365 25.5
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 8.9e-06 55.8 393 26.7
Sabra14G0024800 Salix brachista HOM05D001841 ORTHO05D001767 8.9e-06 55.8 308 28.9
Thecc.02G097700 Theobroma cacao HOM05D001841 ORTHO05D001767 8.9e-06 55.8 302 26.8


User provided reference genes

Program Settings