Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0208151 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 3.3e-87 325.1 173 100.0
Os02g0805600 Oryza sativa ssp. japonica HOM05D001548 ORTHO05D003922 4.8e-14 82.0 73 64.4
Cfa000368 Carpinus fangiana HOM05D001548 ORTHO05D003922 7.0e-13 78.2 75 58.7
Haze_06555 Corylus avellana HOM05D001548 ORTHO05D003922 9.1e-13 77.8 75 57.3
TWI63G0457 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 1.6e-12 77.0 75 57.3
Zm00001eb258260 Zea mays HOM05D001548 ORTHO05D003922 1.6e-12 77.0 73 58.9
CsaV3_1G014810 Cucumis sativus L. HOM05D001548 ORTHO05D003922 3.5e-12 75.9 75 57.3
Thecc.06G196700 Theobroma cacao HOM05D001548 ORTHO05D003922 3.5e-12 75.9 75 57.3
Potri.004G036100 Populus trichocarpa HOM05D001548 ORTHO05D003922 4.5e-12 75.5 75 56.0
Sabra04G0022000 Salix brachista HOM05D001548 ORTHO05D003922 4.5e-12 75.5 75 56.0
CiPaw.10G119700 Carya illinoinensis HOM05D001548 ORTHO05D003922 5.9e-12 75.1 75 56.0
COL.COLO4_31558 Corchorus olitorius HOM05D001548 ORTHO05D003922 5.9e-12 75.1 75 56.0
Gohir.A05G164400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.9e-12 75.1 75 56.0
Gohir.D05G167400 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.9e-12 75.1 75 56.0
Gorai.009G172500 Gossypium raimondii HOM05D001548 ORTHO05D003922 5.9e-12 75.1 75 56.0
Actinidia05591 Actinidia chinensis HOM05D001548 ORTHO05D003922 7.7e-12 74.7 68 58.8
Manes.16G022100 Manihot esculenta HOM05D001548 ORTHO05D003922 7.7e-12 74.7 76 53.9
GSVIVG01017391001 Vitis vinifera HOM05D001548 ORTHO05D003922 7.7e-12 74.7 53 73.6
Cfa000369 Carpinus fangiana HOM05D001548 ORTHO05D003922 1.0e-11 74.3 75 56.0
ClCG01G022620 Citrullus lanatus HOM05D001548 ORTHO05D003922 1.0e-11 74.3 75 54.7
MELO3C004714.2 Cucumis melo HOM05D001548 ORTHO05D003922 1.0e-11 74.3 75 54.7
ECA234G0352 Erigeron canadensis HOM05D001548 ORTHO05D003922 1.0e-11 74.3 75 54.7
QL05p081676 Quercus lobata HOM05D001548 ORTHO05D003922 1.0e-11 74.3 75 56.0
QL05p081681 Quercus lobata HOM05D001548 ORTHO05D003922 1.0e-11 74.3 75 53.3
CSS0049882 Camellia sinensis var. sinensis HOM05D001548 ORTHO05D003922 1.3e-11 73.9 75 56.0
CiPaw.10G119300 Carya illinoinensis HOM05D001548 ORTHO05D003922 1.3e-11 73.9 75 54.7
Duzib160G0467 Durio zibethinus HOM05D001548 ORTHO05D003922 1.3e-11 73.9 75 54.7
Nn1g06719 Nelumbo nucifera HOM05D001548 ORTHO05D003922 1.3e-11 73.9 75 58.7
PGR004G2268 Punica granatum HOM05D001548 ORTHO05D003922 1.3e-11 73.9 68 54.4
Haze_06554 Corylus avellana HOM05D001548 ORTHO05D003922 1.7e-11 73.6 75 56.0
Thhalv10025712m.g Eutrema salsugineum HOM05D001548 ORTHO05D003922 1.7e-11 73.6 75 54.7
Lalb_Chr20g0122221 Lupinus albus HOM05D001548 ORTHO05D003922 1.7e-11 73.6 75 54.7
Thecc.06G196800 Theobroma cacao HOM05D001548 ORTHO05D003922 1.7e-11 73.6 75 54.7
CARHR228260 Cardamine hirsuta HOM05D001548 ORTHO05D003922 2.2e-11 73.2 75 53.3
Eucgr.A02651 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.2e-11 73.2 75 54.7
FvH4_3g04320 Fragaria vesca HOM05D001548 ORTHO05D003922 2.2e-11 73.2 75 54.7
PSO541G1752 Papaver somniferum HOM05D001548 ORTHO05D003922 2.2e-11 73.2 57 64.9
Eucgr.A02652 Eucalyptus grandis HOM05D001548 ORTHO05D003922 2.9e-11 72.8 75 53.3
FAN11G1894 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.9e-11 72.8 75 54.7
FAN21G2301 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.9e-11 72.8 75 54.7
FAN25G1077 Fragaria x ananassa HOM05D001548 ORTHO05D003922 2.9e-11 72.8 75 54.7
RcHm_v2.0_Chr5g0006701 Rosa chinensis HOM05D001548 ORTHO05D003922 2.9e-11 72.8 75 54.7
RcHm_v2.0_Chr5g0006721 Rosa chinensis HOM05D001548 ORTHO05D003922 2.9e-11 72.8 75 54.7
GSVIVG01017385001 Vitis vinifera HOM05D000311 ORTHO05D000183 2.9e-11 72.8 56 67.9
CARHR228270 Cardamine hirsuta HOM05D001548 ORTHO05D003922 3.8e-11 72.4 75 53.3
Cpa.g.sc27.108 Carica papaya HOM05D001548 ORTHO05D003922 3.8e-11 72.4 66 59.1
Gohir.D05G167300 Gossypium hirsutum HOM05D001548 ORTHO05D003922 3.8e-11 72.4 67 59.7
Gorai.009G172400 Gossypium raimondii HOM05D001548 ORTHO05D003922 3.8e-11 72.4 67 59.7
Phvul.006G190900 Phaseolus vulgaris HOM05D001548 ORTHO05D003922 3.8e-11 72.4 67 56.7
RcHm_v2.0_Chr1g0318171 Rosa chinensis HOM05D001548 ORTHO05D003922 3.8e-11 72.4 75 53.3
Sabra11G0030900 Salix brachista HOM05D001548 ORTHO05D003922 3.8e-11 72.4 67 59.7
Sp7g19720 Schrenkiella parvula HOM05D001548 ORTHO05D003922 3.8e-11 72.4 75 53.3
TAR626G1601 Trochodendron aralioides HOM05D001548 ORTHO05D003922 3.8e-11 72.4 75 56.0
HPP92_013220 Vanilla planifolia HOM05D001548 ORTHO05D003922 3.8e-11 72.4 57 61.4
HPP92_013258 Vanilla planifolia HOM05D001548 ORTHO05D003922 3.8e-11 72.4 57 61.4
VMungo0540G2381 Vigna mungo HOM05D001548 ORTHO05D003922 3.8e-11 72.4 75 52.0
Aqoxy1G00822 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 56.0
Aqoxy1G02697 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 56.0
DCAR_008065 Daucus carota HOM05D001548 ORTHO05D003922 5.0e-11 72.0 67 58.2
Eucgr.D00699 Eucalyptus grandis HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 53.3
FAN21G4059 Fragaria x ananassa HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 53.3
Gohir.A10G019800 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 53.3
Gohir.D10G020600 Gossypium hirsutum HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 53.3
Gorai.011G021700 Gossypium raimondii HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 53.3
HanXRQChr17g0555731 Helianthus annuus HOM05D001548 ORTHO05D003922 5.0e-11 72.0 75 53.3
GSVIVG01005847001 Vitis vinifera HOM05D001548 ORTHO05D003922 5.0e-11 72.0 73 56.2
BcaNung02778 Brassica carinata HOM05D001548 ORTHO05D003922 6.5e-11 71.6 75 53.3
FAN11G0633 Fragaria x ananassa HOM05D001548 ORTHO05D003922 6.5e-11 71.6 75 54.7
TAR626G1284 Trochodendron aralioides HOM05D001548 ORTHO05D003922 6.5e-11 71.6 73 56.2
vmacro22278 Vaccinium macrocarpon HOM05D001548 ORTHO05D003922 6.5e-11 71.6 57 64.9
Actinidia01927 Actinidia chinensis HOM05D001548 ORTHO05D003922 8.5e-11 71.2 67 59.7
Aa31LG6G3590 Aethionema arabicum HOM05D001548 ORTHO05D003922 8.5e-11 71.2 75 52.0
Aqoxy339s001 Aquilegia oxysepala HOM05D001548 ORTHO05D003922 8.5e-11 71.2 55 69.1
Cc02_g12600 Coffea canephora HOM05D001548 ORTHO05D003922 8.5e-11 71.2 75 53.3
Glyma.15G068300 Glycine max HOM05D001548 ORTHO05D003922 8.5e-11 71.2 67 58.2
Hma1.2p1_0144F.1_g064910 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 8.5e-11 71.2 75 53.3
Lsat_1_v5_gn_4_57401 Lactuca sativa HOM05D001548 ORTHO05D003922 8.5e-11 71.2 75 52.0
PSO675G8570 Papaver somniferum HOM05D001548 ORTHO05D003922 8.5e-11 71.2 57 63.2
Prupe.7G059000 Prunus persica HOM05D001548 ORTHO05D003922 8.5e-11 71.2 75 53.3
Sed0019244 Sechium edule HOM05D001548 ORTHO05D003922 8.5e-11 71.2 57 63.2
AT4G21580 Arabidopsis thaliana HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 52.0
arahy.Tifrunner.gnm1.ann1.B92LJH Arachis hypogaea HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 52.0
arahy.Tifrunner.gnm1.ann1.K5KWWW Arachis hypogaea HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 52.0
CiPaw.09G159300 Carya illinoinensis HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 53.3
AUR62014739 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.1e-10 70.9 55 67.3
AUR62016918 Chenopodium quinoa HOM05D001548 ORTHO05D003922 1.1e-10 70.9 57 64.9
Ciclev10015925m.g Citrus clementina HOM05D001548 ORTHO05D003922 1.1e-10 70.9 57 64.9
MELO3C007314.2 Cucumis melo HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 52.0
Dinv39801 Davidia involucrata HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 52.0
FvH4_3g04340 Fragaria vesca HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 53.3
Rhsim13G0174500 Rhododendron simsii HOM05D001548 ORTHO05D003922 1.1e-10 70.9 75 53.3
SMO367G0057 Selaginella moellendorffii HOM05D001548 ORTHO05D003922 1.1e-10 70.9 67 56.7
CsaV3_6G049820 Cucumis sativus L. HOM05D001548 ORTHO05D003922 1.5e-10 70.5 67 56.7
Eucgr.L02843 Eucalyptus grandis HOM05D001548 ORTHO05D003922 1.5e-10 70.5 57 63.2
Atru.chr10.1985 Acer truncatum HOM05D001548 ORTHO05D003922 1.9e-10 70.1 57 64.9
AagrBONN_evm.TU.Sc2ySwM_228.729 Anthoceros agrestis HOM05D001548 ORTHO05D003922 1.9e-10 70.1 67 56.7
COL.COLO4_31559 Corchorus olitorius HOM05D001548 ORTHO05D003922 1.9e-10 70.1 73 54.8
Prupe.7G059300 Prunus persica HOM05D001548 ORTHO05D003922 1.9e-10 70.1 75 52.0
Sed0014396 Sechium edule HOM05D001548 ORTHO05D003922 1.9e-10 70.1 66 57.6
THA.LOC104812957 Tarenaya hassleriana HOM05D001548 ORTHO05D003922 1.9e-10 70.1 75 53.3
GSVIVG01005848001 Vitis vinifera HOM05D001548 ORTHO05D003922 1.9e-10 70.1 73 54.8
Zm00001eb339820 Zea mays HOM05D001548 ORTHO05D003922 1.9e-10 70.1 47 80.9
Atru.chr10.1984 Acer truncatum HOM05D001548 ORTHO05D003922 2.5e-10 69.7 57 64.9
Lj6g0026396 Lotus japonicus HOM05D001548 ORTHO05D003922 2.5e-10 69.7 75 52.0
Prupe.4G038700 Prunus persica HOM05D001548 ORTHO05D003922 2.5e-10 69.7 75 52.0
AL7G32440 Arabidopsis lyrata HOM05D001548 ORTHO05D003922 3.2e-10 69.3 75 52.0
MSTRG.15920 Avicennia marina HOM05D001548 ORTHO05D003922 3.2e-10 69.3 75 52.0
CAN.G1181.11 Capsicum annuum HOM05D001548 ORTHO05D003922 3.2e-10 69.3 73 52.1
Duzib235G0785 Durio zibethinus HOM05D001548 ORTHO05D003922 3.2e-10 69.3 66 57.6
FAN25G3513 Fragaria x ananassa HOM05D001548 ORTHO05D003922 3.2e-10 69.3 75 52.0
Hma1.2p1_0144F.1_g064920 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 3.2e-10 69.3 75 50.7
Hma1.2p1_0144F.1_g064936 Hydrangea macrophylla HOM05D001548 ORTHO05D003922 3.2e-10 69.3 75 50.7
Medtr2g012420 Medicago truncatula HOM05D001548 ORTHO05D003922 3.2e-10 69.3 75 49.3
Medtr4g050710 Medicago truncatula HOM05D001548 ORTHO05D003922 3.2e-10 69.3 70 54.3
CANSAT56G2247 Cannabis sativa HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 50.7
Carub.0007s1983 Capsella rubella HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 50.7
Ca_00270_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 50.7
Medtr2g012380 Medicago truncatula HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 49.3
Medtr4g050760 Medicago truncatula HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 49.3
Oeu053926.1 Olea europaea HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 49.3
Oeu053927.1 Olea europaea HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 49.3
Peaxi162Scf00527g00322 Petunia axillaris HOM05D001548 ORTHO05D003922 4.2e-10 68.9 75 50.7
Lalb_Chr15g0090061 Lupinus albus HOM05D001548 ORTHO05D003922 5.5e-10 68.6 75 52.0
Nitab4.5_0001170g0200 Nicotiana tabacum HOM05D001548 ORTHO05D003922 5.5e-10 68.6 75 50.7
RcHm_v2.0_Chr5g0006731 Rosa chinensis HOM05D001548 ORTHO05D003922 5.5e-10 68.6 57 59.6
Hund23633 Selenicereus undatus HOM05D001548 ORTHO05D003922 5.5e-10 68.6 66 54.5
TWI63G1036 Tripterygium wilfordii HOM05D001548 ORTHO05D003922 5.5e-10 68.6 57 59.6
GSVIVG01017397001 Vitis vinifera HOM05D001548 ORTHO05D003922 5.5e-10 68.6 53 69.8
GSVIVG01017420001 Vitis vinifera HOM05D001548 ORTHO05D003922 5.5e-10 68.6 53 69.8
Migut.M01197 Erythranthe guttata HOM05D001548 ORTHO05D003922 7.2e-10 68.2 75 50.7
SGA_v2.0_scaffold7G03963 Striga asiatica HOM05D001548 ORTHO05D003922 7.2e-10 68.2 75 50.7
EL10Ac8g20626 Beta vulgaris HOM05D001548 ORTHO05D003922 9.4e-10 67.8 57 63.2
BraA01t01234Z Brassica rapa HOM05D001548 ORTHO05D003922 9.4e-10 67.8 66 57.6
MD12G1074500 Malus domestica HOM05D001548 ORTHO05D003922 9.4e-10 67.8 75 50.7
Manes.16G022000 Manihot esculenta HOM05D001548 ORTHO05D003922 9.4e-10 67.8 58 56.9
Medtr2g012390 Medicago truncatula HOM05D001548 ORTHO05D003922 9.4e-10 67.8 47 70.2
PGSC0003DMG400022418 Solanum tuberosum HOM05D001548 ORTHO05D003922 9.4e-10 67.8 75 49.3
arahy.Tifrunner.gnm1.ann1.F566GJ Arachis hypogaea HOM05D001548 ORTHO05D003922 1.2e-09 67.4 57 59.6
Ca_00271_v3 Cicer arietinum L. HOM05D001548 ORTHO05D003922 1.2e-09 67.4 75 49.3
MD05G1323900 Malus domestica HOM05D001548 ORTHO05D003922 1.2e-09 67.4 75 48.0
Rhsim13G0174400 Rhododendron simsii HOM05D001548 ORTHO05D003922 1.2e-09 67.4 75 52.0
A01p12900 Brassica napus HOM05D001548 ORTHO05D003922 1.6e-09 67.0 66 54.5
Psat1g207880 Pisum sativum HOM05D001548 ORTHO05D003922 1.6e-09 67.0 75 46.7
ATR0693G362 Amborella trichopoda HOM05D001548 ORTHO05D003922 2.7e-09 66.2 75 52.0
BolC1t01506H Brassica oleracea HOM05D001548 ORTHO05D003922 2.7e-09 66.2 66 56.1
Solyc02g078940.3 Solanum lycopersicum HOM05D001548 ORTHO05D003922 2.7e-09 66.2 75 48.0
Sopen02g023750 Solanum pennellii HOM05D001548 ORTHO05D003922 2.7e-09 66.2 75 48.0
unitig_748.g7573 Utricularia gibba HOM05D001548 ORTHO05D003922 2.7e-09 66.2 75 49.3
Nitab4.5_0003676g0090 Nicotiana tabacum HOM05D001548 ORTHO05D003922 3.6e-09 65.9 75 49.3
Ah.09g235980 Amaranthus hybridus HOM05D003383 ORTHO05D003890 6.1e-09 65.1 75 52.0
C01p15540 Brassica napus HOM05D001548 ORTHO05D003922 8.0e-09 64.7 66 54.5
Mapoly0005s0036 Marchantia polymorpha HOM05D001548 ORTHO05D003922 1.4e-08 63.9 57 57.9
SalBow8G3959 Salvia bowleyana HOM05D001548 ORTHO05D003922 1.4e-08 63.9 55 58.2
GSVIVG01017401001 Vitis vinifera HOM05D001548 ORTHO05D003922 5.2e-08 62.0 56 64.3
Sc17g0006490 Simmondsia chinensis HOM05D001548 ORTHO05D003922 6.8e-08 61.6 66 53.0
GSVIVG01017404001 Vitis vinifera HOM05D000311 ORTHO05D000183 6.8e-08 61.6 53 67.9
GSVIVG01023519001 Vitis vinifera HOM05D001548 ORTHO05D003922 1.5e-07 60.5 59 59.3
Pp3c12_2540 Physcomitrium patens HOM05D001548 ORTHO05D003922 3.4e-07 59.3 47 61.7


User provided reference genes

Program Settings