Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.5e-195 686.0 351 100.0
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.7e-98 363.6 378 55.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.9e-98 362.1 366 56.3
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.9e-97 360.1 348 57.5
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.4e-97 359.8 366 55.7
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.2e-96 357.5 326 59.8
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 6.0e-96 355.1 356 56.5
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 7.8e-96 354.8 377 54.1
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.3e-95 354.0 345 57.7
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.1e-94 350.9 372 55.4
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.5e-94 350.5 337 59.3
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.9e-94 350.1 327 58.4
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 1.9e-94 350.1 339 58.7
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.9e-94 350.1 381 54.1
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.9e-94 350.1 392 53.1
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.9e-94 350.1 371 55.0
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.5e-94 349.7 376 55.3
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.3e-94 349.0 370 55.4
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 7.3e-94 348.2 337 59.1
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 7.3e-94 348.2 337 59.1
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.6e-94 347.8 379 55.9
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 9.6e-94 347.8 374 55.6
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 9.6e-94 347.8 366 57.1
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.3e-93 347.4 376 55.1
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.3e-93 347.4 391 52.9
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.3e-93 347.4 387 55.6
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 1.6e-93 347.1 327 59.0
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 2.1e-93 346.7 367 55.6
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.1e-93 346.7 344 58.4
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.6e-93 345.9 367 55.6
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 4.8e-93 345.5 338 59.5
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.2e-93 345.1 380 54.7
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 8.1e-93 344.7 344 58.1
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 8.1e-93 344.7 387 55.0
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 1.1e-92 344.4 375 53.6
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 1.4e-92 344.0 326 58.9
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.4e-92 344.0 379 54.1
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.8e-92 343.6 323 58.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 3.1e-92 342.8 386 54.1
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.1e-92 342.8 333 59.2
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 3.1e-92 342.8 340 60.3
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.0e-92 342.4 372 54.8
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 6.9e-92 341.7 373 54.7
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 9.0e-92 341.3 352 57.7
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 9.0e-92 341.3 371 53.4
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 1.2e-91 340.9 368 55.4
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.0e-91 340.1 338 56.5
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 3.4e-91 339.3 374 54.3
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 3.4e-91 339.3 364 53.6
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 4.5e-91 339.0 355 55.2
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 5.8e-91 338.6 332 58.1
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.3e-90 337.4 328 59.1
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 1.7e-90 337.0 328 58.2
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 2.2e-90 336.7 328 58.5
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.1e-89 334.3 318 61.3
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 1.1e-89 334.3 335 57.3
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.4e-89 334.0 340 55.9
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.9e-89 333.6 359 55.2
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 1.9e-89 333.6 381 53.0
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 1.9e-89 333.6 353 55.0
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 5.4e-89 332.0 356 55.3
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 5.4e-89 332.0 333 58.3
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 7.1e-89 331.6 329 57.8
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 7.1e-89 331.6 337 55.5
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 1.2e-88 330.9 332 56.9
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 1.6e-88 330.5 330 57.6
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.6e-88 330.5 351 54.4
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 2.1e-88 330.1 367 54.8
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 2.7e-88 329.7 329 57.4
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 2.7e-88 329.7 315 58.7
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 3.5e-88 329.3 312 58.7
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.5e-88 329.3 309 57.3
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 6.0e-88 328.6 351 55.3
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 7.9e-88 328.2 354 54.5
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 7.9e-88 328.2 344 55.8
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.0e-87 327.8 315 58.7
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 1.0e-87 327.8 342 56.7
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 1.0e-87 327.8 375 53.6
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 1.8e-87 327.0 312 58.7
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.8e-87 327.0 312 58.7
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 2.3e-87 326.6 313 57.5
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 3.9e-87 325.9 351 54.7
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 5.1e-87 325.5 336 55.4
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 6.7e-87 325.1 351 54.4
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.9e-86 323.6 309 58.3
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 3.3e-86 322.8 310 58.1
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 4.3e-86 322.4 378 51.3
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 5.6e-86 322.0 334 54.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 2.8e-85 319.7 358 53.6
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 4.8e-85 318.9 309 57.9
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 4.8e-85 318.9 316 56.0
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.1e-84 317.8 389 49.1
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.1e-84 317.8 352 53.7
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.1e-84 317.8 359 51.5
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.8e-84 317.0 391 48.8
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 3.1e-84 316.2 391 49.1
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 4.0e-84 315.8 334 54.5
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 6.9e-84 315.1 379 51.2
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 6.9e-84 315.1 348 51.4
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 1.7e-82 310.5 361 50.7
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.5e-81 306.6 371 50.9
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 3.5e-80 302.8 391 47.8
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.3e-79 300.8 334 53.0
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 2.3e-79 300.1 343 52.2
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.3e-77 294.3 342 53.5
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 2.4e-76 290.0 278 57.2
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 6.9e-76 288.5 368 49.2
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 1.5e-75 287.3 350 47.1
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 3.8e-74 282.7 275 57.1
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.0e-71 274.6 261 60.9
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 2.3e-71 273.5 339 48.4
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 1.5e-70 270.8 343 47.8
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.1e-64 250.4 276 54.0
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.4e-63 247.7 327 48.3
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.4e-63 247.7 327 48.3
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 6.7e-63 245.4 308 47.4
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 2.8e-61 240.0 367 42.0
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.5e-59 234.2 266 51.5
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.4e-59 233.0 266 51.1
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 7.9e-56 221.9 169 64.5
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.8e-55 220.7 253 48.6
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 3.0e-55 219.9 181 66.3
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 6.3e-45 185.7 199 52.3
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 9.4e-41 171.8 314 37.9
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.3e-39 167.2 190 52.6
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 5.7e-30 136.0 349 33.0
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.0e-27 127.5 281 32.7
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.5e-27 126.3 170 45.9
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 5.6e-25 119.4 132 55.3
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 3.6e-24 116.7 145 51.7
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 3.6e-24 116.7 121 55.4
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.9e-21 107.1 138 52.9
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 6.4e-21 105.9 89 61.8
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 1.1e-20 105.1 91 56.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 8.3e-13 79.0 243 29.6
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 2.4e-12 77.4 263 27.4
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 9.2e-12 75.5 89 48.3
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.9e-09 67.8 48 70.8
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 8.1e-08 62.4 90 41.1
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 3.1e-07 60.5 296 23.3
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.0e-07 60.1 81 48.1
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.6e-06 57.4 165 30.3
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 3.4e-06 57.0 77 44.2


User provided reference genes

Program Settings