Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.0e-113 412.5 221 100.0
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.0e-113 412.5 221 100.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.1e-58 228.8 137 83.2
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 3.5e-57 225.7 139 81.3
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 9.8e-52 207.6 121 84.3
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.6e-49 200.3 133 74.4
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.0e-48 197.6 181 60.2
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-48 196.8 117 82.1
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 2.2e-48 196.4 196 56.1
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.9e-48 196.1 191 56.5
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 5.0e-48 195.3 117 82.1
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 5.0e-48 195.3 117 81.2
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 6.5e-48 194.9 117 80.3
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 6.5e-48 194.9 117 81.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 8.5e-48 194.5 117 81.2
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.5e-47 193.7 183 59.0
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.9e-47 193.4 131 75.6
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.5e-47 193.0 117 81.2
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 3.2e-47 192.6 133 71.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 5.5e-47 191.8 117 79.5
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 9.5e-47 191.0 117 80.3
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.6e-46 190.3 117 81.2
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 2.1e-46 189.9 181 59.7
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.7e-46 189.5 114 81.6
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 2.7e-46 189.5 122 78.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.7e-46 189.5 117 82.1
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 3.6e-46 189.1 117 80.3
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 3.6e-46 189.1 117 80.3
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 6.1e-46 188.3 117 79.5
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.1e-46 188.3 117 80.3
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 6.1e-46 188.3 180 59.4
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 8.0e-46 188.0 117 80.3
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 8.0e-46 188.0 117 80.3
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 8.0e-46 188.0 117 80.3
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 8.0e-46 188.0 117 80.3
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 8.0e-46 188.0 134 73.1
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.0e-45 187.6 117 80.3
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.0e-45 187.6 146 68.5
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.0e-45 187.6 116 79.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.0e-45 187.6 129 72.9
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-45 187.2 117 80.3
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.4e-45 187.2 130 73.8
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.4e-45 187.2 131 74.0
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.4e-45 187.2 134 71.6
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.8e-45 186.8 131 74.0
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-45 186.4 117 79.5
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 2.3e-45 186.4 117 79.5
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 2.3e-45 186.4 145 69.0
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 3.0e-45 186.0 132 73.5
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 3.0e-45 186.0 117 79.5
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.0e-45 186.0 122 76.2
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 3.0e-45 186.0 117 79.5
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 3.0e-45 186.0 117 79.5
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 4.0e-45 185.7 122 77.9
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 4.0e-45 185.7 117 77.8
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.8e-45 184.9 133 73.7
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 6.8e-45 184.9 116 81.0
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 6.8e-45 184.9 130 75.4
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 6.8e-45 184.9 122 76.2
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 6.8e-45 184.9 131 73.3
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 8.8e-45 184.5 123 77.2
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 8.8e-45 184.5 131 73.3
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 8.8e-45 184.5 171 59.6
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.2e-44 184.1 114 80.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.2e-44 184.1 116 79.3
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.2e-44 184.1 129 72.9
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.5e-44 183.7 117 77.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.6e-44 183.0 146 65.8
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-44 183.0 129 72.9
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.6e-44 183.0 129 72.9
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 3.4e-44 182.6 117 77.8
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-44 182.6 121 75.2
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 3.4e-44 182.6 121 75.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.4e-44 182.6 117 76.9
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.4e-44 182.2 103 87.4
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 4.4e-44 182.2 126 73.8
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 5.7e-44 181.8 193 52.8
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 5.7e-44 181.8 193 52.8
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 5.7e-44 181.8 183 56.3
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 7.5e-44 181.4 144 66.0
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 7.5e-44 181.4 115 80.9
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 7.5e-44 181.4 123 75.6
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 7.5e-44 181.4 167 60.5
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.3e-43 180.6 103 86.4
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.7e-43 180.3 117 76.9
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.2e-43 179.9 116 75.9
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 2.2e-43 179.9 117 75.2
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.8e-43 179.5 113 80.5
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.8e-43 179.5 117 74.4
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.8e-43 179.5 117 76.9
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 3.7e-43 179.1 153 63.4
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 3.7e-43 179.1 130 70.8
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 3.7e-43 179.1 132 71.2
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 4.9e-43 178.7 133 69.9
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 4.9e-43 178.7 133 69.9
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 4.9e-43 178.7 133 69.9
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.9e-43 178.7 145 66.9
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 4.9e-43 178.7 219 50.2
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.3e-43 177.9 133 70.7
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.3e-43 177.9 133 70.7
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.3e-43 177.9 133 70.7
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 8.3e-43 177.9 117 76.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.1e-42 177.6 117 75.2
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 1.8e-42 176.8 117 74.4
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 2.4e-42 176.4 132 68.2
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.4e-42 176.4 133 69.9
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 7.0e-42 174.9 116 75.0
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 7.0e-42 174.9 122 69.7
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.6e-41 173.7 111 77.5
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.6e-41 173.7 111 77.5
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.6e-41 173.7 111 77.5
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.0e-41 173.3 117 74.4
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 5.9e-41 171.8 112 78.6
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.0e-40 171.0 109 75.2
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.0e-40 171.0 101 84.2
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.3e-40 169.9 186 51.1
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.9e-40 169.5 118 67.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.8e-40 169.1 108 75.0
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 6.6e-40 168.3 129 69.0
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.9e-39 166.8 97 86.6
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.6e-38 162.5 116 69.0
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.0e-37 161.0 174 52.3
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 6.8e-37 158.3 133 66.2
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 2.6e-36 156.4 115 70.4
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 9.8e-36 154.5 121 70.2
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.7e-35 153.7 184 52.2
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.7e-35 152.5 106 68.9
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.1e-34 151.0 203 43.8
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 5.4e-34 148.7 95 76.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 4.6e-33 145.6 144 58.3
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 9.5e-31 137.9 76 89.5
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.2e-30 137.5 116 64.7
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.1e-30 136.7 116 62.9
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 3.1e-29 132.9 115 53.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 7.0e-26 121.7 133 47.4
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 6.2e-22 108.6 64 82.8
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.2e-22 108.6 129 48.1
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 8.1e-22 108.2 86 65.1
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.4e-21 107.5 71 70.4
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 3.7e-19 99.4 91 52.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 7.1e-18 95.1 66 71.2
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 5.1e-16 89.0 89 56.2
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.6e-16 88.6 61 72.1
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.9e-15 87.0 55 80.0
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 2.5e-15 86.7 103 44.7
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.3e-15 85.9 88 50.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 7.3e-15 85.1 130 41.5
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 8.1e-14 81.6 116 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.0e-13 79.3 93 49.5
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.3e-11 74.3 61 60.7
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.4e-10 70.1 51 70.6
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 3.5e-09 66.2 105 37.1
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.7e-08 63.9 67 52.2
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 6.6e-08 62.0 142 32.4
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.2e-06 57.8 50 58.0
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.6e-06 57.4 35 68.6
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.8e-06 56.6 88 42.0


User provided reference genes

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