Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 0.0e+00 2185.6 1112 100.0
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 2.0e-270 936.4 951 53.3
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 6.9e-162 575.9 1167 34.5
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 3.0e-141 507.3 1154 31.9
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 9.6e-140 502.3 1161 32.5
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 1.0e-136 492.3 1139 32.1
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 1.4e-135 488.4 1015 32.4
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.4e-135 488.4 1148 31.0
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 1.8e-133 481.5 1141 30.9
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 1.1e-132 478.8 1144 31.2
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 1.1e-132 478.8 1143 31.3
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 2.8e-131 474.2 1137 31.2
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 1.1e-130 472.2 1112 31.7
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 5.3e-130 469.9 1110 31.1
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 5.3e-130 469.9 1106 31.0
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 1.5e-129 468.4 1160 30.6
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 5.0e-128 463.4 1045 32.6
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 3.2e-127 460.7 1144 31.4
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 5.5e-127 459.9 1155 30.4
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 1.4e-125 455.3 1153 31.1
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 1.5e-124 451.8 1101 31.2
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 1.7e-123 448.4 1208 29.7
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 3.7e-123 447.2 1154 30.2
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 6.3e-123 446.4 929 32.5
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 6.3e-123 446.4 1179 30.6
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 1.1e-122 445.7 1038 31.0
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 1.1e-122 445.7 1034 32.3
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.8e-122 444.9 1011 30.9
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 1.8e-122 444.9 1007 32.6
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 1.2e-121 442.2 1180 29.5
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 7.7e-121 439.5 1018 30.8
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 1.3e-120 438.7 1018 30.9
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 5.0e-120 436.8 1149 29.9
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 4.2e-119 433.7 1163 30.4
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.7e-118 431.0 1025 30.3
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 4.7e-118 430.3 991 30.8
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 1.8e-117 428.3 993 30.7
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 6.7e-117 426.4 1010 30.6
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 1.5e-116 425.2 864 33.9
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 5.7e-116 423.3 931 32.0
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 7.4e-116 422.9 1023 30.5
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 9.7e-116 422.5 692 36.7
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.7e-115 421.8 1085 31.2
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 2.2e-115 421.4 1139 29.7
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 6.3e-115 419.9 779 32.6
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 2.4e-114 417.9 1038 30.9
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 1.6e-113 415.2 1131 29.5
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.6e-113 415.2 932 32.5
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.0e-112 412.5 1161 28.4
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 5.0e-112 410.2 1130 29.5
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 1.5e-111 408.7 1131 29.4
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 3.2e-111 407.5 1235 29.1
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 1.4e-109 402.1 1148 29.8
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 2.3e-109 401.4 1007 30.4
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 8.8e-109 399.4 1081 29.0
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 3.3e-108 397.5 1069 28.3
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 1.1e-106 392.5 1173 28.2
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.7e-105 387.9 835 33.9
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 6.5e-104 383.3 902 31.7
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 9.4e-103 379.4 1000 30.6
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 6.3e-99 366.7 791 31.0
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.4e-98 365.5 1080 27.6
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 5.4e-98 363.6 1115 29.9
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 7.0e-98 363.2 780 32.8
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 7.0e-90 336.7 979 28.1
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 5.9e-89 333.6 704 33.0
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 1.9e-87 328.6 1015 27.3
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 4.3e-87 327.4 418 42.8
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 5.4e-82 310.5 1126 25.3
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 8.6e-80 303.1 583 36.4
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 2.1e-78 298.5 882 28.5
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 2.9e-75 288.1 395 41.8
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 6.0e-73 280.4 877 28.8
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 5.0e-72 277.3 292 48.6
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 2.1e-62 245.4 297 47.5
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 2.2e-59 235.3 354 41.0
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 2.3e-56 225.3 934 23.8
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.1e-53 216.5 396 32.1
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 1.1e-50 206.5 202 48.5
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 3.6e-46 191.4 357 30.3
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.1e-45 189.9 394 33.0
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 1.7e-27 129.4 272 28.7
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-25 123.2 147 43.5
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-25 123.2 147 43.5
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 1.3e-22 113.2 97 54.6
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 1.0e-16 93.6 84 54.8
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 1.0e-16 93.6 232 27.2
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 1.3e-16 93.2 135 37.8
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.9e-15 89.4 201 27.9
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 2.2e-06 59.3 72 45.8
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 4.8e-06 58.2 286 27.6
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 8.2e-06 57.4 138 32.6


User provided reference genes

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