Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0168901 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D294936 3.0e-105 385.2 195 100.0
Os05g0512600 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D000156 2.1e-18 96.7 67 73.1
PSO017G3670 Papaver somniferum HOM05D000020 ORTHO05D000156 1.1e-09 67.8 70 45.7
Zm00001eb214620 Zea mays HOM05D000020 ORTHO05D000156 6.9e-09 65.1 47 55.3
PSO478G0392 Papaver somniferum HOM05D000020 ORTHO05D000156 1.2e-08 64.3 70 42.9
Zm00001eb152300 Zea mays HOM05D000020 ORTHO05D000156 1.5e-08 63.9 48 52.1
ATR0064G034 Amborella trichopoda HOM05D000020 ORTHO05D000156 4.5e-08 62.4 47 53.2
Manes.01G028300 Manihot esculenta HOM05D000020 ORTHO05D000156 4.5e-08 62.4 51 52.9
Aqoxy3G03626 Aquilegia oxysepala HOM05D000020 ORTHO05D000156 5.8e-08 62.0 43 58.1
Os03g0421800 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D000156 5.8e-08 62.0 72 43.1
Zm00001eb057700 Zea mays HOM05D000020 ORTHO05D000156 7.6e-08 61.6 47 53.2
Os01g0763900 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D000156 1.3e-07 60.8 51 45.1
TAR374G0386 Trochodendron aralioides HOM05D000020 ORTHO05D000156 1.7e-07 60.5 44 56.8
HPP92_009484 Vanilla planifolia HOM05D000020 ORTHO05D000156 1.7e-07 60.5 70 41.4
Sabra08G0071800 Salix brachista HOM05D000020 ORTHO05D000156 2.2e-07 60.1 46 52.2
VMungo0251G0988 Vigna mungo HOM05D000020 ORTHO05D000156 2.2e-07 60.1 107 36.4
BcaB03g15464 Brassica carinata HOM05D000020 ORTHO05D000156 2.9e-07 59.7 74 43.2
BcaB05g24438 Brassica carinata HOM05D000020 ORTHO05D000156 2.9e-07 59.7 74 43.2
BcaC08g45901 Brassica carinata HOM05D000020 ORTHO05D000156 2.9e-07 59.7 74 43.2
C06p37070 Brassica napus HOM05D000020 ORTHO05D000156 2.9e-07 59.7 74 43.2
BolC6t38818H Brassica oleracea HOM05D000020 ORTHO05D000156 2.9e-07 59.7 74 43.2
BraA07t30793Z Brassica rapa HOM05D000020 ORTHO05D000156 2.9e-07 59.7 74 43.2
CANSAT64G1115 Cannabis sativa HOM05D000020 ORTHO05D000156 2.9e-07 59.7 42 57.1
Nn3g17435 Nelumbo nucifera HOM05D000020 ORTHO05D000156 2.9e-07 59.7 42 54.8
TWI09G0673 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 2.9e-07 59.7 46 54.3
TWI09G1621 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 2.9e-07 59.7 46 54.3
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 3.8e-07 59.3 46 58.7
Manes.05G110700 Manihot esculenta HOM05D000020 ORTHO05D000156 3.8e-07 59.3 51 49.0
TWI31G1107 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 3.8e-07 59.3 46 52.2
TAR629G0574 Trochodendron aralioides HOM05D000020 ORTHO05D000156 3.8e-07 59.3 48 50.0
TAR629G3123 Trochodendron aralioides HOM05D000020 ORTHO05D000156 3.8e-07 59.3 48 50.0
AUR62008517 Chenopodium quinoa HOM05D000020 ORTHO05D000156 4.9e-07 58.9 46 56.5
AUR62021573 Chenopodium quinoa HOM05D000020 ORTHO05D000156 4.9e-07 58.9 46 56.5
Glyma.20G025800 Glycine max HOM05D000020 ORTHO05D000156 4.9e-07 58.9 42 57.1
THA.LOC104800366 Tarenaya hassleriana HOM05D000020 ORTHO05D000156 4.9e-07 58.9 74 40.5
CANSAT54G0817 Cannabis sativa HOM05D000020 ORTHO05D010249 6.5e-07 58.5 43 55.8
PSO017G3447 Papaver somniferum HOM05D000020 ORTHO05D000156 6.5e-07 58.5 47 53.2
PSO478G2200 Papaver somniferum HOM05D000020 ORTHO05D000156 6.5e-07 58.5 47 53.2
C02p26270 Brassica napus HOM05D000020 ORTHO05D000156 8.4e-07 58.2 79 41.8
CDE02G2383 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 8.4e-07 58.2 46 47.8
Thhalv10019091m.g Eutrema salsugineum HOM05D000020 ORTHO05D000156 8.4e-07 58.2 46 56.5
Glyma.07G225800 Glycine max HOM05D000020 ORTHO05D000156 8.4e-07 58.2 42 57.1
Phvul.002G102400 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 8.4e-07 58.2 48 50.0
THA.LOC104822012 Tarenaya hassleriana HOM05D000020 ORTHO05D000156 8.4e-07 58.2 43 55.8
arahy.Tifrunner.gnm1.ann1.62AV4C Arachis hypogaea HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 59.5
arahy.Tifrunner.gnm1.ann1.GI13C9 Arachis hypogaea HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 59.5
Ca_18802_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 1.1e-06 57.8 46 52.2
Migut.E00048 Erythranthe guttata HOM05D000020 ORTHO05D000156 1.1e-06 57.8 46 52.2
Glyma.01G058300 Glycine max HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 57.1
Glyma.02G116100 Glycine max HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 57.1
MD16G1061700 Malus domestica HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 57.1
Nn1g03632 Nelumbo nucifera HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 52.4
Nn4g23417 Nelumbo nucifera HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 52.4
Phvul.003G043000 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 1.1e-06 57.8 42 57.1
arahy.Tifrunner.gnm1.ann1.V4GUGH Arachis hypogaea HOM05D000020 ORTHO05D000156 1.4e-06 57.4 46 50.0
arahy.Tifrunner.gnm1.ann1.V8SBL2 Arachis hypogaea HOM05D000020 ORTHO05D000156 1.4e-06 57.4 46 50.0
MSTRG.7749 Avicennia marina HOM05D000020 ORTHO05D000156 1.4e-06 57.4 46 52.2
BcaC03g15068 Brassica carinata HOM05D000020 ORTHO05D000156 1.4e-06 57.4 74 43.2
A02p15790 Brassica napus HOM05D000020 ORTHO05D000156 1.4e-06 57.4 74 43.2
BolC2t08694H Brassica oleracea HOM05D000020 ORTHO05D000156 1.4e-06 57.4 74 43.2
CARHR062170 Cardamine hirsuta HOM05D000020 ORTHO05D000156 1.4e-06 57.4 76 40.8
Ca_04961_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 1.4e-06 57.4 42 57.1
Lj3A1030T109 Lonicera japonica HOM05D000020 ORTHO05D000156 1.4e-06 57.4 67 41.8
Lalb_Chr10g0098791 Lupinus albus HOM05D000020 ORTHO05D000156 1.4e-06 57.4 46 52.2
PGR102G2814 Punica granatum HOM05D000020 ORTHO05D000156 1.4e-06 57.4 46 50.0
SGA_v2.0_scaffold36G14453 Striga asiatica HOM05D000020 ORTHO05D000156 1.4e-06 57.4 46 50.0
THA.LOC104808544 Tarenaya hassleriana HOM05D000020 ORTHO05D000156 1.4e-06 57.4 74 39.2
TAR622G0884 Trochodendron aralioides HOM05D000020 ORTHO05D000156 1.4e-06 57.4 48 47.9
HPP92_012296 Vanilla planifolia HOM05D000020 ORTHO05D000156 1.4e-06 57.4 51 47.1
Zm00001eb108530 Zea mays HOM05D000020 ORTHO05D000156 1.4e-06 57.4 51 49.0
Zm00001eb326830 Zea mays HOM05D000020 ORTHO05D000156 1.4e-06 57.4 51 49.0
CARHR025510 Cardamine hirsuta HOM05D000020 ORTHO05D000156 1.9e-06 57.0 53 50.9
CDE05G1374 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 1.9e-06 57.0 46 47.8
CDE06G2381 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 1.9e-06 57.0 42 47.6
CsaV3_6G032570 Cucumis sativus L. HOM05D000020 ORTHO05D000156 1.9e-06 57.0 46 47.8
CsaV3_6G033650 Cucumis sativus L. HOM05D000020 ORTHO05D000156 1.9e-06 57.0 46 47.8
Potri.008G095300 Populus trichocarpa HOM05D000020 ORTHO05D000156 1.9e-06 57.0 42 54.8
Prupe.1G286200 Prunus persica HOM05D000020 ORTHO05D000156 1.9e-06 57.0 110 33.6
RcHm_v2.0_Chr4g0438481 Rosa chinensis HOM05D000020 ORTHO05D000156 1.9e-06 57.0 46 47.8
HPP92_024921 Vanilla planifolia HOM05D000020 ORTHO05D000156 1.9e-06 57.0 46 47.8
BcaC08g46380 Brassica carinata HOM05D000020 ORTHO05D000156 2.5e-06 56.6 74 40.5
A07p35610 Brassica napus HOM05D011628 ORTHO05D014769 2.5e-06 56.6 74 40.5
C06p40620 Brassica napus HOM05D011628 ORTHO05D014769 2.5e-06 56.6 74 40.5
BolC6t39369H Brassica oleracea HOM05D011628 ORTHO05D014769 2.5e-06 56.6 74 40.5
BraA07t31149Z Brassica rapa HOM05D011628 ORTHO05D014769 2.5e-06 56.6 74 40.5
CSS0007488 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D000156 2.5e-06 56.6 46 50.0
FAN07G0646 Fragaria x ananassa HOM05D000020 ORTHO05D000156 2.5e-06 56.6 42 57.1
MBI16_g05783_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D000156 2.5e-06 56.6 44 52.3
PGR119G1831 Punica granatum HOM05D000020 ORTHO05D000156 2.5e-06 56.6 46 50.0
Sp5g24360 Schrenkiella parvula HOM05D000020 ORTHO05D000156 2.5e-06 56.6 74 40.5
Aqoxy2G03982 Aquilegia oxysepala HOM05D000020 ORTHO05D000156 3.2e-06 56.2 47 51.1
Cpa.g.sc1.118 Carica papaya HOM05D000020 ORTHO05D000156 3.2e-06 56.2 47 46.8
MELO3C011423.2 Cucumis melo HOM05D000020 ORTHO05D000156 3.2e-06 56.2 46 45.7
Sed0025335 Sechium edule HOM05D000020 ORTHO05D000156 3.2e-06 56.2 46 47.8
HPP92_012251 Vanilla planifolia HOM05D000020 ORTHO05D000156 3.2e-06 56.2 110 34.5
VMungo1215G0259 Vigna mungo HOM05D000020 ORTHO05D000156 3.2e-06 56.2 42 54.8
MSTRG.750 Avicennia marina HOM05D000020 ORTHO05D000156 4.2e-06 55.8 46 50.0
Haze_11915 Corylus avellana HOM05D000020 ORTHO05D000156 4.2e-06 55.8 43 53.5
ECA233G5008 Erigeron canadensis HOM05D000020 ORTHO05D000156 4.2e-06 55.8 46 50.0
FAN17G0209 Fragaria x ananassa HOM05D000020 ORTHO05D000156 4.2e-06 55.8 46 50.0
PGSC0003DMG400017797 Solanum tuberosum HOM05D000020 ORTHO05D000156 4.2e-06 55.8 46 52.2
TPR.G1609 Trifolium pratense HOM05D000020 ORTHO05D000156 4.2e-06 55.8 44 47.7
BcaB03g15888 Brassica carinata HOM05D000020 ORTHO05D000156 5.5e-06 55.5 74 39.2
Cfa008885 Carpinus fangiana HOM05D000020 ORTHO05D000156 5.5e-06 55.5 43 53.5
ClCG08G010380 Citrullus lanatus HOM05D000020 ORTHO05D000156 5.5e-06 55.5 46 45.7
Duzib248G1251 Durio zibethinus HOM05D000020 ORTHO05D000156 5.5e-06 55.5 46 47.8
Eucgr.B03157 Eucalyptus grandis HOM05D000020 ORTHO05D000156 5.5e-06 55.5 46 45.7
Lalb_Chr17g0341171 Lupinus albus HOM05D000020 ORTHO05D000156 5.5e-06 55.5 42 54.8
Medtr5g044530 Medicago truncatula HOM05D000020 ORTHO05D000156 5.5e-06 55.5 42 57.1
Peaxi162Scf00047g00429 Petunia axillaris HOM05D000020 ORTHO05D000156 5.5e-06 55.5 67 38.8
Psat7g133600 Pisum sativum HOM05D000020 ORTHO05D000156 5.5e-06 55.5 46 50.0
Sabra10G0120700 Salix brachista HOM05D000020 ORTHO05D000156 5.5e-06 55.5 42 50.0
Hund05840 Selenicereus undatus HOM05D000020 ORTHO05D000156 5.5e-06 55.5 46 50.0
TWI75G1388 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 5.5e-06 55.5 46 47.8
arahy.Tifrunner.gnm1.ann1.CQF7DQ Arachis hypogaea HOM05D000020 ORTHO05D000156 7.1e-06 55.1 75 36.0
arahy.Tifrunner.gnm1.ann1.XCYS0H Arachis hypogaea HOM05D000020 ORTHO05D000156 7.1e-06 55.1 75 36.0
Carub.0001s2758 Capsella rubella HOM05D000020 ORTHO05D000156 7.1e-06 55.1 77 39.0
Carub.0002s1589 Capsella rubella HOM05D000020 ORTHO05D000156 7.1e-06 55.1 71 43.7
Os03g0756300 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D000156 7.1e-06 55.1 114 29.8
SalBow2G0816 Salvia bowleyana HOM05D000020 ORTHO05D000156 7.1e-06 55.1 46 47.8
SalBow2G3234 Salvia bowleyana HOM05D000020 ORTHO05D000156 7.1e-06 55.1 46 47.8
Sed0007510 Sechium edule HOM05D000020 ORTHO05D000156 7.1e-06 55.1 42 52.4
Sc04g0007620 Simmondsia chinensis HOM05D000020 ORTHO05D000156 7.1e-06 55.1 46 47.8
CSS0031791 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D000156 9.3e-06 54.7 46 45.7
DCAR_011697 Daucus carota HOM05D000020 ORTHO05D001617 9.3e-06 54.7 62 38.7
Lj4g0008988 Lotus japonicus HOM05D000020 ORTHO05D000156 9.3e-06 54.7 42 52.4
Phvul.005G048800 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 9.3e-06 54.7 75 36.0
QL03p072055 Quercus lobata HOM05D000020 ORTHO05D000156 9.3e-06 54.7 105 32.4
QL03p072424 Quercus lobata HOM05D000020 ORTHO05D000156 9.3e-06 54.7 105 32.4
Rhsim12G0151200 Rhododendron simsii HOM05D000020 ORTHO05D000156 9.3e-06 54.7 48 45.8
SGA_v2.0_scaffold16G07778 Striga asiatica HOM05D000020 ORTHO05D000156 9.3e-06 54.7 46 47.8
TWI79G1220 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 9.3e-06 54.7 46 47.8
GSVIVG01012212001 Vitis vinifera HOM05D000020 ORTHO05D000156 9.3e-06 54.7 42 50.0


User provided reference genes

Program Settings