Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.2e-64 248.8 125 100.0
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.8e-58 229.2 118 92.4
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.8e-58 229.2 118 92.4
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.8e-58 229.2 118 92.4
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.8e-58 229.2 118 92.4
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.8e-58 229.2 118 92.4
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.9e-58 228.0 116 93.1
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 8.8e-58 226.9 118 91.5
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 5.2e-50 201.1 120 77.5
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 5.7e-49 197.6 118 78.8
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.3e-48 196.4 118 78.0
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.7e-48 196.1 118 78.0
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.7e-48 196.1 118 78.0
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.2e-48 195.7 118 78.0
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 3.7e-48 194.9 116 79.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 3.7e-48 194.9 116 79.3
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 6.3e-48 194.1 116 78.4
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 6.3e-48 194.1 116 79.3
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 8.2e-48 193.7 118 78.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.1e-47 193.4 118 77.1
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.1e-47 193.4 116 76.7
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.1e-47 193.4 116 77.6
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.8e-47 192.6 116 79.3
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.8e-47 192.6 116 77.6
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 2.4e-47 192.2 117 74.4
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.4e-47 192.2 116 77.6
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.4e-47 192.2 118 77.1
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.1e-47 191.8 118 76.3
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 3.1e-47 191.8 120 74.2
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 3.1e-47 191.8 116 74.1
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 4.1e-47 191.4 114 78.1
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 4.1e-47 191.4 118 77.1
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 5.3e-47 191.0 116 74.1
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 5.3e-47 191.0 116 75.9
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 5.3e-47 191.0 116 75.9
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.3e-47 191.0 116 75.9
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 5.3e-47 191.0 125 74.4
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 7.0e-47 190.7 116 74.1
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 9.1e-47 190.3 118 77.1
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.2e-46 189.9 116 74.1
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.6e-46 189.5 116 75.9
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.6e-46 189.5 119 75.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.0e-46 189.1 116 77.6
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.0e-46 189.1 118 75.4
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.7e-46 188.7 116 75.9
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.5e-46 188.0 116 75.9
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 4.5e-46 188.0 118 77.1
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 4.5e-46 188.0 118 75.4
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.9e-46 187.6 121 73.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 78.4
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 78.4
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 78.4
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 73.3
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.9e-46 187.6 129 71.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 7.7e-46 187.2 114 77.2
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.0e-45 186.8 125 70.4
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.3e-45 186.4 118 72.0
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.3e-45 186.4 118 75.4
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.7e-45 186.0 116 71.6
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.7e-45 186.0 119 75.6
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.2e-45 185.7 118 77.1
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-45 185.3 118 70.3
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-45 185.3 118 70.3
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.9e-45 185.3 116 75.0
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.9e-45 185.3 120 73.3
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 3.8e-45 184.9 118 70.3
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 3.8e-45 184.9 118 70.3
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 3.8e-45 184.9 118 70.3
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.8e-45 184.9 118 71.2
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 3.8e-45 184.9 116 74.1
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 5.0e-45 184.5 118 71.2
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 5.0e-45 184.5 114 80.7
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 5.0e-45 184.5 118 71.2
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 5.0e-45 184.5 118 70.3
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 5.0e-45 184.5 118 72.9
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.0e-45 184.5 118 72.9
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 5.0e-45 184.5 118 72.9
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 6.5e-45 184.1 115 75.7
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 6.5e-45 184.1 118 69.5
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 6.5e-45 184.1 118 69.5
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 6.5e-45 184.1 121 71.9
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 6.5e-45 184.1 116 73.3
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 8.5e-45 183.7 118 69.5
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 8.5e-45 183.7 118 69.5
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 8.5e-45 183.7 117 75.2
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-44 183.3 118 72.0
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.5e-44 183.0 118 72.0
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.9e-44 182.6 116 74.1
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.9e-44 182.6 117 75.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.9e-44 182.6 117 75.2
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.5e-44 182.2 113 80.5
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.5e-44 182.2 118 68.6
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.5e-44 182.2 118 68.6
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.5e-44 182.2 118 72.0
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.5e-44 181.0 118 71.2
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 7.2e-44 180.6 124 70.2
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-43 179.5 118 71.2
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-43 179.5 116 72.4
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.6e-43 179.5 115 73.0
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.7e-43 178.7 118 72.9
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.7e-43 178.7 117 70.1
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 2.7e-43 178.7 117 73.5
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 2.7e-43 178.7 118 71.2
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.6e-43 178.3 114 73.7
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 4.7e-43 177.9 118 70.3
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 8.0e-43 177.2 116 72.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 8.0e-43 177.2 116 73.3
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 3.0e-42 175.3 165 55.2
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-41 172.9 116 74.1
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.6e-41 172.2 116 68.1
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.6e-41 172.2 116 68.1
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 3.4e-41 171.8 129 65.1
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 9.8e-41 170.2 116 68.1
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.1e-39 166.8 116 68.1
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.8e-39 166.0 118 66.9
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 7.0e-39 164.1 118 68.6
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.2e-38 163.3 134 58.2
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.7e-37 159.5 101 75.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 5.0e-37 157.9 97 78.4
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.5e-36 155.6 116 66.4
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.3e-36 155.2 98 72.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.6e-35 152.9 98 74.5
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.6e-35 152.9 98 74.5
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.6e-35 151.8 101 70.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.6e-35 151.8 122 63.1
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 6.1e-35 151.0 114 63.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.3e-34 149.1 98 71.4
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 2.3e-34 149.1 100 72.0
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 5.2e-34 147.9 117 65.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 6.8e-34 147.5 98 70.4
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 9.8e-33 143.7 115 59.1
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.8e-32 142.1 99 69.7
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 3.1e-31 138.7 115 58.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 4.1e-31 138.3 113 59.3
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.3e-29 132.5 118 61.9
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 4.3e-28 128.3 96 67.7
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 5.2e-26 121.3 64 89.1
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 3.7e-24 115.2 97 59.8
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.3e-21 105.9 67 73.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.3e-21 105.9 59 83.1
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.0e-21 105.5 65 75.4
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 6.6e-21 104.4 59 81.4
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 6.6e-21 104.4 64 73.4
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 2.5e-20 102.4 65 72.3
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 4.3e-20 101.7 59 81.4
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 9.5e-20 100.5 59 79.7
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.1e-19 99.4 55 85.5
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 3.6e-19 98.6 88 59.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 8.0e-19 97.4 61 70.5
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 6.8e-18 94.4 53 77.4
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.2e-17 93.6 52 78.8
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.5e-17 93.2 50 76.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 2.0e-17 92.8 138 42.8
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 4.4e-17 91.7 53 73.6
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 5.8e-17 91.3 50 78.0
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 2.9e-16 89.0 53 73.6
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.1e-15 87.0 131 43.5
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.2e-11 73.6 72 52.8
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.3e-10 69.3 48 70.8
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 2.4e-07 59.3 33 84.8


User provided reference genes

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