Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 7.3e-122 440.7 234 100.0
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 1.4e-69 266.9 232 65.1
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 5.0e-38 162.2 241 45.2
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 5.0e-38 162.2 240 46.7
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 1.6e-36 157.1 244 47.5
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 7.9e-36 154.8 234 46.6
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 6.7e-35 151.8 234 45.7
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 5.7e-34 148.7 235 44.7
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 5.7e-34 148.7 227 46.3
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 9.7e-34 147.9 243 44.0
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 1.7e-33 147.1 237 42.6
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 1.7e-33 147.1 100 74.0
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 2.2e-33 146.7 230 44.3
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 2.2e-33 146.7 243 42.8
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 2.8e-33 146.4 242 42.1
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 3.7e-33 146.0 241 42.3
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 4.8e-33 145.6 244 43.4
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 1.2e-31 141.0 232 42.7
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.6e-31 140.6 241 43.2
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 1.0e-30 137.9 232 43.1
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 1.7e-30 137.1 235 41.7
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 1.7e-30 137.1 237 41.4
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 2.2e-30 136.7 240 41.2
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 5.0e-30 135.6 236 42.4
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 1.5e-29 134.0 237 41.8
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 3.2e-29 132.9 248 41.1
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 3.2e-29 132.9 228 40.8
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.2e-29 132.5 242 40.5
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 5.5e-29 132.1 242 41.3
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.5e-29 132.1 242 41.3
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.5e-29 132.1 242 41.3
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.2e-28 131.0 236 40.7
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 2.7e-28 129.8 235 42.1
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 6.1e-28 128.6 233 42.5
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.0e-27 127.9 232 43.1
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.0e-27 127.9 242 40.1
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.8e-27 127.1 239 43.5
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.3e-27 126.7 253 39.1
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 5.2e-27 125.6 234 42.3
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 8.8e-27 124.8 234 42.3
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.2e-26 124.4 235 41.7
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 1.2e-26 124.4 231 40.7
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.5e-26 124.0 241 40.7
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 2.0e-26 123.6 246 37.8
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.6e-26 123.2 227 39.6
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 4.4e-26 122.5 234 42.3
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 4.4e-26 122.5 254 40.2
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 7.5e-26 121.7 241 41.5
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.3e-25 120.9 229 40.6
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.3e-25 120.9 243 40.7
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.3e-25 120.9 228 38.6
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 2.2e-25 120.2 254 40.6
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 1.4e-24 117.5 236 41.1
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 3.1e-24 116.3 238 39.5
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 3.1e-24 116.3 244 37.7
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 5.3e-24 115.5 233 39.9
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 5.3e-24 115.5 230 40.9
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 7.0e-24 115.2 232 39.2
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 9.1e-24 114.8 234 41.0
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 1.6e-23 114.0 228 37.3
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.7e-23 113.2 239 37.7
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 3.5e-23 112.8 241 39.0
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 4.5e-23 112.5 238 37.4
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 5.9e-23 112.1 231 37.2
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 1.0e-22 111.3 223 39.5
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.0e-22 111.3 242 38.4
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 2.2e-22 110.2 226 37.2
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 2.9e-22 109.8 236 36.9
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 2.9e-22 109.8 217 40.1
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 3.8e-22 109.4 239 38.9
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 5.0e-22 109.0 228 39.5
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 8.5e-22 108.2 232 37.9
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 1.5e-21 107.5 229 40.6
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 1.9e-21 107.1 236 37.7
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 4.2e-21 105.9 238 37.4
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 4.2e-21 105.9 244 37.7
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.1e-20 103.6 243 37.4
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 2.7e-20 103.2 238 38.2
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 3.6e-20 102.8 245 38.8
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 4.7e-20 102.4 238 37.0
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 6.1e-20 102.1 237 38.8
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 8.0e-20 101.7 233 38.2
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 4.0e-19 99.4 245 37.1
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 5.2e-19 99.0 281 34.2
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 1.2e-18 97.8 189 41.8
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 2.0e-18 97.1 237 35.9
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 2.6e-18 96.7 237 34.6
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 7.5e-18 95.1 240 32.9
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 9.8e-18 94.7 250 36.4
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 2.8e-17 93.2 242 35.1
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 4.8e-17 92.4 235 34.9
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 1.4e-16 90.9 225 38.2
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 1.8e-16 90.5 106 51.9
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 2.4e-16 90.1 186 35.5
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 3.1e-16 89.7 237 33.8
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 9.1e-16 88.2 251 32.7
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 1.2e-15 87.8 206 35.9
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 1.2e-15 87.8 204 35.8
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.0e-14 84.7 245 32.7
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 2.3e-14 83.6 350 29.7
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 6.5e-14 82.0 148 41.9
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 1.9e-13 80.5 124 46.0
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 3.2e-13 79.7 171 43.3
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 4.2e-13 79.3 65 66.2
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 9.5e-13 78.2 155 38.1
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 2.1e-12 77.0 161 39.8
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 2.8e-12 76.6 61 63.9
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 3.6e-12 76.3 237 34.6
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 6.1e-12 75.5 197 34.0
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 8.0e-12 75.1 180 39.4
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.0e-11 74.7 132 38.6
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 1.8e-11 73.9 105 49.5
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 1.8e-11 73.9 78 53.8
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 1.2e-10 71.2 164 37.2
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 2.0e-10 70.5 226 31.4
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.4e-10 69.3 78 53.8
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 7.5e-10 68.6 110 39.1
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.7e-09 67.4 93 46.2
Os06g0121600 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D299595 6.6e-06 55.5 29 96.6


User provided reference genes

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