Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.2e-177 625.5 326 100.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 3.4e-109 399.1 266 71.4
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.3e-108 397.1 296 67.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 4.1e-107 392.1 288 67.0
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.3e-105 387.1 297 67.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.3e-105 387.1 279 68.5
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 6.6e-105 384.8 289 67.8
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 8.6e-105 384.4 268 70.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.1e-104 384.0 248 74.2
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.9e-104 383.3 284 67.3
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.5e-104 382.9 300 66.3
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 4.3e-104 382.1 262 69.1
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.2e-103 380.6 288 65.3
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-103 380.2 285 66.7
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.6e-103 380.2 285 66.7
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.1e-103 379.8 247 73.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 2.1e-103 379.8 261 69.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.8e-103 379.4 265 71.7
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 6.2e-103 378.3 269 68.8
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 8.0e-103 377.9 299 66.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 8.0e-103 377.9 267 67.8
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.1e-102 377.5 247 72.1
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.4e-102 377.1 266 68.8
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.4e-102 377.1 246 73.6
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.3e-102 376.3 286 64.7
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.3e-102 376.3 266 69.2
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.1e-102 375.9 245 73.5
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 4.0e-102 375.6 295 64.1
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 4.0e-102 375.6 260 71.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 4.0e-102 375.6 245 73.9
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.8e-102 374.8 287 66.2
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 6.8e-102 374.8 311 62.4
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 8.9e-102 374.4 283 66.4
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.5e-101 373.6 290 66.2
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.0e-101 373.2 290 65.5
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.6e-101 372.9 247 72.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 4.4e-101 372.1 266 69.2
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 5.8e-101 371.7 246 70.7
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 5.8e-101 371.7 246 72.0
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 9.8e-101 370.9 290 65.9
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 9.8e-101 370.9 275 65.1
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.7e-100 370.2 249 69.5
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.2e-100 369.8 270 67.4
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.2e-100 369.8 272 66.5
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.2e-100 369.8 259 68.7
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.9e-100 369.4 299 63.5
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 4.9e-100 368.6 270 66.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 4.9e-100 368.6 246 70.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 6.4e-100 368.2 250 72.0
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.1e-99 367.5 267 67.0
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.1e-99 367.5 249 69.1
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-99 367.5 289 63.3
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.9e-99 366.7 270 67.8
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.4e-99 366.3 260 67.7
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.4e-99 366.3 284 64.1
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 5.4e-99 365.2 286 64.3
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 5.4e-99 365.2 288 64.2
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 9.2e-99 364.4 268 67.2
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 9.2e-99 364.4 270 65.9
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.2e-98 364.0 295 62.7
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.2e-98 364.0 295 62.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-98 364.0 234 74.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.2e-98 364.0 248 69.0
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.0e-98 363.2 290 62.1
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.0e-98 363.2 269 66.5
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 2.7e-98 362.8 246 69.1
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.7e-98 362.8 285 65.6
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.7e-98 362.8 277 63.5
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 4.6e-98 362.1 266 66.2
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 6.0e-98 361.7 232 75.0
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.0e-98 361.7 290 61.7
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 7.8e-98 361.3 262 67.2
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.0e-97 359.4 250 68.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 5.0e-97 358.6 273 64.1
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 8.6e-97 357.8 295 62.0
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.9e-96 356.7 239 73.2
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 4.3e-96 355.5 295 62.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 3.6e-95 352.4 230 74.3
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-94 350.5 284 61.3
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 2.3e-94 349.7 284 60.9
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.3e-94 349.7 269 64.3
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 2.3e-94 349.7 316 57.3
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 5.2e-94 348.6 274 64.2
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 8.9e-94 347.8 271 63.8
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 8.9e-94 347.8 271 63.8
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.2e-93 347.4 272 63.6
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 2.0e-93 346.7 234 71.4
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 7.5e-93 344.7 281 61.9
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.7e-92 343.6 337 55.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.2e-92 343.2 282 61.0
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 3.7e-92 342.4 325 55.7
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 4.9e-92 342.0 285 62.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 2.1e-90 336.7 235 77.9
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 3.9e-89 332.4 276 60.9
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.6e-87 327.0 351 50.1
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 4.0e-86 322.4 266 62.4
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 8.9e-86 321.2 261 60.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 3.8e-84 315.8 305 53.1
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-83 313.5 236 66.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 9.2e-83 311.2 194 76.3
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.6e-82 310.5 311 55.9
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 7.8e-82 308.1 245 62.0
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.1e-79 300.1 194 71.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 9.3e-75 284.6 197 69.5
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 4.5e-69 265.8 209 66.0
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 9.9e-69 264.6 204 65.2
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 5.4e-67 258.8 250 58.0
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-58 231.1 156 71.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-56 224.6 210 56.2
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 4.8e-55 219.2 172 64.0
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 9.0e-54 214.9 159 65.4
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.6e-53 213.4 199 53.8
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.6e-53 213.4 172 64.5
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 2.9e-52 209.9 130 77.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.9e-52 209.9 172 63.4
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 7.9e-50 201.8 143 67.8
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-46 191.0 229 48.0
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.1e-42 177.2 133 63.2
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-42 177.2 156 61.5
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 7.9e-42 175.3 156 60.3
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 7.9e-42 175.3 156 60.9
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-41 174.9 156 59.6
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-41 172.6 173 55.5
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-41 172.6 156 59.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.5e-40 170.2 98 84.7
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-40 168.3 156 58.3
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-39 166.0 154 58.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-38 164.1 162 56.8
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.8e-38 164.1 99 81.8
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 6.9e-38 162.2 108 75.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-35 154.1 141 60.3
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.4e-33 147.9 329 36.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-33 146.4 156 53.8
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-31 140.2 94 74.5
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-30 136.3 95 71.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-30 136.3 125 59.2
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-30 136.0 160 50.0
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-30 136.0 123 60.2
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-30 136.0 160 50.0
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 5.9e-29 132.5 175 44.6
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.7e-28 131.0 88 65.9
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.4e-24 115.5 156 47.4
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 3.1e-22 110.2 80 67.5
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-22 109.0 108 55.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-19 101.3 70 72.9
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-18 97.4 138 43.5
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.7e-15 87.8 57 73.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-14 84.3 94 52.1
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-14 82.4 95 49.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 7.0e-14 82.4 53 71.7
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.4e-06 58.2 132 33.3


User provided reference genes

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