Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 1.2e-190 669.8 394 100.0
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 2.8e-150 535.8 386 76.9
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 1.8e-40 171.0 446 34.1
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 9.9e-39 165.2 382 34.3
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.3e-34 150.2 430 32.6
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.6e-34 149.4 428 33.6
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.2e-33 146.0 429 32.9
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.2e-33 146.0 426 32.6
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 1.8e-32 144.4 458 29.3
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 1.8e-32 144.4 446 31.2
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 3.1e-32 143.7 458 30.8
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 4.0e-32 143.3 455 29.7
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 1.2e-31 141.7 453 32.2
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 2.6e-31 140.6 451 29.9
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 2.6e-31 140.6 471 31.8
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 4.5e-31 139.8 452 30.8
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 9.9e-31 138.7 374 34.2
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 9.9e-31 138.7 427 31.1
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 1.7e-30 137.9 454 31.3
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 2.2e-30 137.5 404 33.9
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 2.9e-30 137.1 459 29.4
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 2.9e-30 137.1 452 31.2
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 3.8e-30 136.7 429 29.8
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 3.8e-30 136.7 238 37.4
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 4.9e-30 136.3 452 29.2
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 6.4e-30 136.0 460 31.1
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 8.4e-30 135.6 429 30.5
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.1e-29 135.2 456 27.9
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.9e-29 134.4 461 28.0
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 4.2e-29 133.3 448 30.6
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.6e-28 131.3 441 29.0
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 4.6e-28 129.8 446 30.3
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 7.9e-28 129.0 437 28.8
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 7.9e-28 129.0 460 29.6
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 7.9e-28 129.0 423 31.9
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 1.0e-27 128.6 225 38.7
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 1.8e-27 127.9 439 30.5
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 2.3e-27 127.5 443 29.6
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 2.3e-27 127.5 462 28.4
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 3.0e-27 127.1 225 37.8
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 3.9e-27 126.7 442 29.9
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 3.9e-27 126.7 442 29.9
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 3.9e-27 126.7 442 29.9
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 3.9e-27 126.7 448 31.7
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 3.9e-27 126.7 445 29.4
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 5.1e-27 126.3 440 30.5
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 6.7e-27 125.9 459 28.3
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 1.1e-26 125.2 454 29.7
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 2.5e-26 124.0 453 29.6
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 2.5e-26 124.0 226 36.3
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 3.3e-26 123.6 447 29.5
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 7.4e-26 122.5 462 28.6
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 9.6e-26 122.1 389 30.8
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 9.6e-26 122.1 243 35.4
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 1.3e-25 121.7 457 28.2
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 1.3e-25 121.7 458 28.8
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 1.3e-25 121.7 464 29.3
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 1.3e-25 121.7 453 28.3
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 2.8e-25 120.6 458 28.8
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 2.8e-25 120.6 453 30.9
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 2.8e-25 120.6 468 29.9
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 3.7e-25 120.2 448 29.0
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 3.7e-25 120.2 435 30.3
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.8e-24 117.9 455 29.5
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 2.4e-24 117.5 453 28.3
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 9.0e-24 115.5 455 29.2
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 1.5e-23 114.8 449 28.7
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 1.5e-23 114.8 452 27.4
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 2.0e-23 114.4 448 28.6
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 2.0e-23 114.4 450 29.3
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 2.6e-23 114.0 459 27.2
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 2.6e-23 114.0 413 29.5
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 3.4e-23 113.6 125 48.8
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 5.8e-23 112.8 375 30.7
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.3e-22 111.7 449 27.2
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 4.9e-22 109.8 438 27.2
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 1.1e-21 108.6 452 27.2
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 1.1e-21 108.6 465 27.5
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 1.4e-21 108.2 452 27.2
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 1.9e-21 107.8 404 31.2
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.9e-21 107.8 403 31.5
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 2.5e-21 107.5 447 26.2
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 5.5e-21 106.3 403 31.3
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 9.3e-21 105.5 424 28.3
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 1.6e-20 104.8 456 28.1
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 2.7e-20 104.0 407 28.0
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 1.0e-19 102.1 424 27.4
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.8e-19 101.3 144 43.1
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 9.0e-16 89.0 409 29.1
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 2.0e-15 87.8 214 34.1
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 2.0e-15 87.8 457 24.3
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 7.1e-13 79.3 75 50.7
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 1.3e-11 75.1 62 58.1
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 2.3e-11 74.3 452 23.7
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 3.0e-11 73.9 603 23.9
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 5.7e-10 69.7 94 41.5
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.2e-09 67.8 344 26.2
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.8e-09 66.6 392 26.0
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 4.8e-09 66.6 134 31.3
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 2.4e-08 64.3 333 27.9
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 1.3e-06 58.5 250 30.8
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 6.5e-06 56.2 69 40.6
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 8.5e-06 55.8 280 25.0


User provided reference genes

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