Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 4.0e-98 361.7 216 100.0
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.3e-37 160.6 189 66.1
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 6.9e-34 148.3 199 63.8
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.0e-13 81.3 178 52.8
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.3e-13 80.1 183 50.3
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 6.7e-13 78.6 152 40.1
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 3.3e-12 76.3 192 41.1
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 7.4e-12 75.1 174 50.6
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.1e-11 73.6 163 54.0
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 2.1e-11 73.6 100 78.0
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 2.1e-11 73.6 192 39.1
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 2.1e-11 73.6 153 39.9
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.8e-11 73.2 173 48.0
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 6.3e-11 72.0 201 45.3
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 8.2e-11 71.6 194 38.7
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.2e-11 71.6 156 43.6
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 8.2e-11 71.6 105 71.4
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.1e-10 71.2 170 40.0
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-10 71.2 188 37.8
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-10 71.2 156 44.2
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.8e-10 70.5 105 72.4
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-10 70.5 105 72.4
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-10 70.5 105 72.4
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-10 70.5 105 72.4
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-10 70.5 105 72.4
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.8e-10 70.5 106 72.6
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 2.4e-10 70.1 171 45.0
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 2.4e-10 70.1 106 72.6
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.4e-10 70.1 93 76.3
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.4e-10 70.1 104 49.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 3.1e-10 69.7 101 72.3
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 3.1e-10 69.7 100 77.0
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 3.1e-10 69.7 194 40.2
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.1e-10 69.7 188 37.8
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.1e-10 69.7 188 37.8
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.1e-10 69.3 104 42.3
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 5.3e-10 68.9 160 43.1
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 6.9e-10 68.6 100 76.0
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 6.9e-10 68.6 152 50.7
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 9.0e-10 68.2 175 39.4
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 9.0e-10 68.2 185 47.0
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.2e-09 67.8 105 70.5
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.5e-09 67.4 155 37.4
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-09 67.4 99 53.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.5e-09 67.4 154 42.9
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.0e-09 67.0 93 50.5
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.0e-09 67.0 93 50.5
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 2.0e-09 67.0 161 39.1
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.6e-09 66.6 93 57.0
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 2.6e-09 66.6 93 53.8
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.6e-09 66.6 93 53.8
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 4.5e-09 65.9 182 37.4
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 4.5e-09 65.9 104 69.2
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.5e-09 65.9 106 50.0
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 5.9e-09 65.5 142 42.3
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.9e-09 65.5 103 51.5
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 5.9e-09 65.5 93 51.6
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 5.9e-09 65.5 104 66.3
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 5.9e-09 65.5 104 65.4
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 7.6e-09 65.1 150 34.0
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 7.6e-09 65.1 150 34.0
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 7.6e-09 65.1 192 34.9
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 7.6e-09 65.1 139 46.0
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 7.6e-09 65.1 175 46.3
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.0e-08 64.7 105 49.5
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 1.0e-08 64.7 114 46.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.3e-08 64.3 195 38.5
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.3e-08 64.3 139 46.8
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.3e-08 64.3 104 50.0
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.3e-08 64.3 93 57.0
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.3e-08 64.3 104 43.3
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.7e-08 63.9 181 31.5
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.7e-08 63.9 115 48.7
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-08 63.9 93 44.1
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.2e-08 63.5 148 36.5
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.2e-08 63.5 148 52.0
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.2e-08 63.5 92 78.3
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.9e-08 63.2 93 52.7
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 2.9e-08 63.2 97 55.7
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.9e-08 63.2 111 52.3
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 3.8e-08 62.8 115 39.1
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.8e-08 62.8 181 31.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 3.8e-08 62.8 171 46.2
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 3.8e-08 62.8 164 38.4
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.8e-08 62.8 93 53.8
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 3.8e-08 62.8 100 53.0
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 3.8e-08 62.8 153 40.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.8e-08 62.8 105 40.0
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.0e-08 62.4 100 73.0
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 5.0e-08 62.4 100 50.0
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.0e-08 62.4 99 42.4
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.0e-08 62.4 99 42.4
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 6.5e-08 62.0 141 33.3
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 6.5e-08 62.0 171 44.4
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 6.5e-08 62.0 83 45.8
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 8.5e-08 61.6 100 50.0
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 8.5e-08 61.6 97 67.0
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 8.5e-08 61.6 166 50.0
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 8.5e-08 61.6 104 50.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 8.5e-08 61.6 100 50.0
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.1e-07 61.2 132 44.7
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.1e-07 61.2 132 44.7
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.1e-07 61.2 110 40.0
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.1e-07 61.2 121 52.1
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.1e-07 61.2 152 48.7
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.1e-07 61.2 99 42.4
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.4e-07 60.8 148 38.5
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.9e-07 60.5 95 42.1
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 2.5e-07 60.1 105 67.6
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 2.5e-07 60.1 139 40.3
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 3.2e-07 59.7 104 70.2
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.2e-07 59.3 176 33.5
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 5.5e-07 58.9 164 34.8
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.5e-07 58.9 97 41.2
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 5.5e-07 58.9 95 68.4
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 7.2e-07 58.5 146 33.6
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 7.2e-07 58.5 105 68.6
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 1.2e-06 57.8 147 53.1
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.2e-06 57.8 108 38.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.6e-06 57.4 84 42.9
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.6e-06 57.4 82 52.4
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.6e-06 57.4 105 70.5
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.6e-06 57.4 84 54.8
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 2.1e-06 57.0 129 32.6
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 2.1e-06 57.0 89 43.8
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.7e-06 56.6 99 50.5
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.7e-06 56.6 89 47.2
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.6e-06 56.2 82 53.7
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.6e-06 56.2 110 37.3
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 3.6e-06 56.2 81 55.6
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.6e-06 55.8 89 42.7
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 4.6e-06 55.8 93 38.7
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.6e-06 55.8 94 41.5
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 4.6e-06 55.8 90 41.1
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 6.1e-06 55.5 95 40.0
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 6.1e-06 55.5 89 38.2
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 6.1e-06 55.5 132 32.6
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 6.1e-06 55.5 103 36.9
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 6.1e-06 55.5 162 32.1
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 7.9e-06 55.1 80 42.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 7.9e-06 55.1 168 36.9
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 7.9e-06 55.1 83 54.2
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.9e-06 55.1 97 50.5
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 7.9e-06 55.1 95 58.9


User provided reference genes

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