Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.0e-219 766.5 423 100.0
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 1.9e-133 479.9 434 62.7
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 2.6e-93 346.7 420 52.1
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 5.7e-93 345.5 407 57.5
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 2.1e-55 220.7 355 44.2
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 3.4e-53 213.4 174 62.6
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 4.4e-53 213.0 386 40.2
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 4.4e-53 213.0 254 51.6
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 4.9e-52 209.5 358 41.6
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 1.4e-51 208.0 193 59.1
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 6.0e-50 202.6 382 40.6
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 3.9e-49 199.9 187 58.3
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 3.9e-49 199.9 183 59.6
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.9e-49 199.9 178 61.2
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 5.1e-49 199.5 190 57.9
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 6.6e-49 199.1 367 39.2
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 6.6e-49 199.1 392 39.5
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 8.7e-49 198.7 183 60.1
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 1.1e-48 198.4 187 57.8
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.9e-48 197.6 183 60.1
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.9e-48 197.6 183 60.1
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.9e-48 197.6 183 60.1
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.9e-48 197.6 183 60.1
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 2.5e-48 197.2 174 60.9
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 3.3e-48 196.8 174 60.9
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 3.3e-48 196.8 194 57.2
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.3e-48 196.8 175 61.7
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 4.3e-48 196.4 191 57.6
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 4.3e-48 196.4 172 60.5
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 1.3e-47 194.9 194 56.2
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.3e-47 194.9 195 56.9
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.6e-47 194.5 198 57.1
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 1.6e-47 194.5 264 48.1
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.1e-47 194.1 183 59.6
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 2.1e-47 194.1 353 39.7
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.8e-47 193.7 360 39.4
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 2.8e-47 193.7 181 59.7
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 3.6e-47 193.4 183 59.0
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 4.8e-47 193.0 191 56.5
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 8.1e-47 192.2 194 55.7
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 8.1e-47 192.2 192 54.7
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.4e-46 191.4 191 56.5
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.4e-46 191.4 314 43.6
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 1.4e-46 191.4 268 45.1
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 1.8e-46 191.0 196 55.1
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.8e-46 191.0 186 57.0
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 2.4e-46 190.7 182 58.2
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.4e-46 190.7 354 38.7
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 6.9e-46 189.1 361 41.3
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 6.9e-46 189.1 169 60.4
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 6.9e-46 189.1 191 55.0
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 1.5e-45 188.0 429 41.5
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.5e-45 188.0 174 58.6
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 1.5e-45 188.0 182 58.8
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.5e-45 188.0 195 53.8
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.0e-45 187.6 174 59.2
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 2.0e-45 187.6 174 59.2
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 2.0e-45 187.6 184 56.0
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 2.6e-45 187.2 318 44.3
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 3.4e-45 186.8 180 56.7
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 5.8e-45 186.0 306 46.1
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 5.8e-45 186.0 196 54.1
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 7.6e-45 185.7 190 53.7
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 9.9e-45 185.3 173 59.0
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 9.9e-45 185.3 189 54.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 9.9e-45 185.3 438 39.3
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 1.3e-44 184.9 389 37.8
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.7e-44 184.5 308 43.8
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.7e-44 184.5 354 42.7
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 2.2e-44 184.1 166 58.4
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 2.2e-44 184.1 180 56.1
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 2.2e-44 184.1 178 56.2
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 2.9e-44 183.7 388 39.7
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 3.8e-44 183.3 177 55.9
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 4.9e-44 183.0 357 38.4
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 4.9e-44 183.0 388 40.7
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 4.9e-44 183.0 187 55.6
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 6.4e-44 182.6 188 52.7
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 8.4e-44 182.2 181 56.9
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 8.4e-44 182.2 191 54.5
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 1.4e-43 181.4 180 56.7
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.4e-43 181.4 174 57.5
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 1.4e-43 181.4 171 57.9
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 1.9e-43 181.0 171 57.9
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 1.9e-43 181.0 206 52.4
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 1.9e-43 181.0 378 39.4
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 2.4e-43 180.6 197 53.3
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 3.2e-43 180.3 164 59.8
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 3.2e-43 180.3 191 52.9
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 5.4e-43 179.5 351 41.9
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 7.1e-43 179.1 169 55.6
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 9.3e-43 178.7 440 38.4
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 9.3e-43 178.7 263 45.2
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.6e-42 177.9 174 54.6
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 4.6e-42 176.4 174 57.5
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 6.0e-42 176.0 151 60.3
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 1.0e-41 175.3 166 54.8
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 1.3e-41 174.9 166 56.6
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 2.3e-41 174.1 348 39.7
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 3.0e-41 173.7 168 55.4
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 3.9e-41 173.3 168 54.8
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 5.1e-41 172.9 166 56.0
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 8.7e-41 172.2 371 39.6
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 8.7e-41 172.2 371 39.6
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.1e-40 171.8 137 65.7
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 2.5e-40 170.6 168 54.2
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 7.4e-40 169.1 169 56.2
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 2.8e-39 167.2 169 53.8
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 2.8e-39 167.2 186 50.5
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 2.8e-39 167.2 169 53.8
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 3.7e-39 166.8 145 62.1
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 4.8e-39 166.4 169 53.3
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 6.2e-39 166.0 169 53.3
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 6.2e-39 166.0 169 53.3
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 8.1e-39 165.6 186 50.0
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 2.4e-38 164.1 169 52.7
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 5.3e-38 162.9 183 51.9
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 1.5e-37 161.4 392 37.0
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 8.4e-36 155.6 163 53.4
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 3.2e-35 153.7 171 53.2
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 4.2e-35 153.3 158 53.8
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 1.2e-34 151.8 158 54.4
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 6.0e-34 149.4 144 54.9
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 1.6e-31 141.4 191 46.1
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 1.4e-30 138.3 159 45.9
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 1.2e-29 135.2 130 53.8
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.2e-26 125.2 110 65.5
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.3e-25 121.7 106 62.3
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 7.2e-19 99.4 88 62.5
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 9.4e-19 99.0 88 61.4
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 2.2e-15 87.8 120 37.5
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 8.2e-15 85.9 77 58.4
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 1.5e-13 81.6 66 60.6
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.6e-10 71.6 65 56.9
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.0e-09 67.4 67 52.2
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.1e-08 65.5 117 35.0
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 9.7e-08 62.4 129 27.9
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.2e-07 61.2 100 40.0
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 3.7e-07 60.5 62 56.5
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.7e-07 60.5 123 32.5
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 4.8e-07 60.1 112 31.2
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 6.3e-07 59.7 64 51.6
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 8.2e-07 59.3 103 33.0
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.1e-06 58.9 100 39.0
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.1e-06 58.9 101 33.7
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.4e-06 58.5 112 33.9
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.4e-06 58.5 99 36.4
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.4e-06 58.5 142 29.6
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.4e-06 58.5 100 38.0
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 1.8e-06 58.2 157 27.4
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.8e-06 58.2 144 26.4
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.8e-06 58.2 152 27.6
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 2.4e-06 57.8 116 31.0
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 2.4e-06 57.8 99 35.4
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.4e-06 57.8 142 27.5
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 2.4e-06 57.8 115 31.3
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.1e-06 57.4 112 33.9
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 3.1e-06 57.4 148 29.7
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 3.1e-06 57.4 99 35.4
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 3.1e-06 57.4 99 35.4
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 4.1e-06 57.0 99 36.4
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 5.3e-06 56.6 130 30.8
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 5.3e-06 56.6 99 37.4
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 5.3e-06 56.6 142 30.3
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 7.0e-06 56.2 99 36.4
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 7.0e-06 56.2 129 27.9
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 7.0e-06 56.2 112 33.9
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 7.0e-06 56.2 64 46.9
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 9.1e-06 55.8 113 32.7


User provided reference genes

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