Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.3e-292 1008.8 471 100.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 6.8e-236 820.5 456 85.5
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 8.0e-221 770.4 443 78.1
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 3.1e-220 768.5 443 77.9
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.2e-219 766.5 443 77.9
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 4.4e-219 764.6 437 78.9
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 7.5e-219 763.8 444 78.6
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.4e-217 759.6 432 80.6
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.4e-217 759.6 443 78.1
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.9e-217 759.2 440 78.0
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.9e-217 759.2 454 76.4
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.4e-217 758.8 449 76.2
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 3.2e-217 758.4 443 77.9
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 5.4e-217 757.7 446 77.4
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.2e-216 756.5 442 78.1
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.6e-216 756.1 435 79.3
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 2.0e-216 755.7 436 78.4
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 2.0e-216 755.7 446 76.9
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 2.7e-216 755.4 452 76.5
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 4.6e-216 754.6 435 78.4
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 7.8e-216 753.8 433 79.0
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 1.3e-215 753.1 435 78.4
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 3.0e-215 751.9 450 76.7
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 3.0e-215 751.9 436 79.8
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.9e-215 751.5 446 77.1
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 5.0e-215 751.1 447 78.1
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 6.6e-215 750.7 433 78.3
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 6.6e-215 750.7 458 75.8
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 6.6e-215 750.7 439 77.4
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 8.6e-215 750.4 458 75.8
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 8.6e-215 750.4 464 73.7
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.1e-214 750.0 446 76.7
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.1e-214 750.0 459 75.8
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.1e-214 750.0 451 76.5
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.9e-214 749.2 447 78.1
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.9e-214 749.2 435 78.9
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 4.3e-214 748.0 447 77.9
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 4.3e-214 748.0 433 78.5
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 4.3e-214 748.0 450 77.1
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 5.6e-214 747.7 433 78.5
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 5.6e-214 747.7 443 77.0
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 9.5e-214 746.9 433 79.7
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 9.5e-214 746.9 433 79.7
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.2e-213 746.5 458 75.1
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 2.1e-213 745.7 446 76.5
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.8e-213 745.3 449 77.1
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 2.8e-213 745.3 441 76.9
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 3.6e-213 745.0 449 75.5
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 4.7e-213 744.6 433 77.8
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 8.1e-213 743.8 438 77.6
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 8.1e-213 743.8 455 75.4
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 2.3e-212 742.3 436 76.8
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 3.1e-212 741.9 435 76.8
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 3.1e-212 741.9 458 75.3
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 3.1e-212 741.9 445 76.6
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 3.1e-212 741.9 445 76.6
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.0e-212 741.5 433 78.3
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 5.2e-212 741.1 433 78.5
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 5.2e-212 741.1 456 75.2
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 5.2e-212 741.1 436 77.1
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 8.9e-212 740.3 432 77.3
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 8.9e-212 740.3 433 77.6
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.2e-211 740.0 433 77.6
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 2.0e-211 739.2 433 77.1
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 4.4e-211 738.0 447 75.6
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 7.5e-211 737.3 435 77.2
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 7.5e-211 737.3 446 75.3
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 9.9e-211 736.9 438 76.5
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-210 736.5 433 78.1
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 3.7e-210 734.9 447 76.7
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 4.9e-210 734.6 437 76.7
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 8.3e-210 733.8 443 74.7
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.1e-209 733.4 436 76.6
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.1e-209 733.4 436 76.6
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.4e-209 733.0 438 76.7
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.9e-209 732.6 443 74.7
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.9e-209 732.6 443 75.2
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 7.8e-208 727.2 438 75.1
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 3.0e-207 725.3 440 76.1
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.0e-207 725.3 438 76.0
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.3e-206 720.7 462 73.4
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.2e-205 719.9 479 69.9
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.2e-205 719.9 479 69.9
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 3.6e-205 718.4 467 71.9
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.4e-204 715.7 433 74.1
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 4.4e-203 711.4 443 74.3
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 6.4e-202 707.6 440 74.3
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.5e-195 686.4 459 70.6
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 2.7e-192 675.6 450 70.0
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 4.6e-192 674.9 380 81.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 2.5e-190 669.1 483 66.5
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 4.3e-190 668.3 432 71.8
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 5.6e-190 667.9 437 70.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.8e-188 662.9 381 79.3
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 1.8e-183 646.4 410 72.2
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 6.7e-183 644.4 447 66.4
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 6.9e-180 634.4 439 67.9
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 4.3e-174 615.1 450 65.8
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.2e-171 607.1 443 65.5
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 4.9e-170 601.7 435 65.5
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.5e-163 580.1 411 67.9
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 5.7e-158 561.6 320 79.7
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.4e-156 556.2 300 83.7
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 6.9e-156 554.7 442 62.2
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 2.9e-154 549.3 304 81.6
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 3.2e-153 545.8 471 57.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 5.0e-146 521.9 387 65.9
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 2.1e-144 516.5 280 83.6
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 1.8e-124 450.3 282 74.1
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.3e-77 294.7 196 73.0
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.5e-67 260.0 129 89.1
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 7.4e-65 252.3 133 85.0
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 5.3e-63 246.1 301 48.5
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.7e-61 241.1 179 64.8
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 8.4e-61 238.8 159 68.6
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 2.1e-59 234.2 238 50.8
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 5.1e-58 229.6 381 41.5
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.3e-53 214.9 120 80.8
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.8e-47 194.5 135 65.9
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 2.4e-47 194.1 133 66.9
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.5e-46 189.9 119 73.9
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 4.2e-44 183.3 249 47.0
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.2e-37 161.0 118 60.2
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.1e-31 142.1 87 69.0
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.1e-23 112.5 71 64.8
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-21 108.6 91 58.2
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 3.8e-21 107.1 61 77.0
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 3.8e-21 107.1 62 77.4
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 1.3e-16 92.0 185 35.7
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.6e-14 85.1 63 61.9
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.7e-14 84.3 112 39.3
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 4.4e-09 67.0 45 68.9


User provided reference genes

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