Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.1e-75 285.8 163 100.0
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 4.6e-14 82.0 61 62.3
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.5e-12 76.3 53 66.0
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.3e-12 75.5 54 61.1
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 7.3e-12 74.7 54 61.1
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.2e-11 73.9 54 59.3
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.6e-11 72.4 54 57.4
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.6e-11 72.4 54 61.1
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.6e-11 72.4 54 57.4
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 4.7e-11 72.0 54 63.0
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.7e-11 72.0 54 63.0
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 4.7e-11 72.0 54 59.3
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 6.2e-11 71.6 54 61.1
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 8.0e-11 71.2 54 59.3
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 8.0e-11 71.2 54 59.3
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.1e-10 70.9 57 61.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.1e-10 70.9 57 61.4
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.1e-10 70.9 54 59.3
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.1e-10 70.9 54 57.4
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.3e-10 69.7 54 63.0
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 3.1e-10 69.3 56 53.6
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.1e-10 69.3 57 59.6
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 3.1e-10 69.3 54 53.7
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 3.1e-10 69.3 54 53.7
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.1e-10 69.3 54 53.7
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.0e-10 68.9 54 57.4
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.0e-10 68.9 54 57.4
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.2e-10 68.6 53 58.5
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 5.2e-10 68.6 53 56.6
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 5.2e-10 68.6 53 60.4
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 5.2e-10 68.6 53 58.5
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.2e-10 68.6 54 53.7
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 6.8e-10 68.2 54 57.4
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 6.8e-10 68.2 54 55.6
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 6.8e-10 68.2 53 56.6
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 6.8e-10 68.2 53 56.6
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.8e-10 68.2 53 56.6
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 8.9e-10 67.8 54 55.6
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 8.9e-10 67.8 54 57.4
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.2e-09 67.4 54 57.4
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.2e-09 67.4 54 59.3
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 1.2e-09 67.4 54 59.3
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.0e-09 66.6 53 56.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.0e-09 66.6 53 58.5
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 2.6e-09 66.2 54 55.6
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.4e-09 65.9 54 55.6
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 3.4e-09 65.9 55 54.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 3.4e-09 65.9 54 55.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 3.4e-09 65.9 54 55.6
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 3.4e-09 65.9 54 55.6
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.4e-09 65.9 54 57.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 55.6
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 55.6
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 55.6
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 55.6
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 55.6
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 53.7
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 53.7
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 5.8e-09 65.1 54 55.6
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 7.5e-09 64.7 54 53.7
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 7.5e-09 64.7 54 53.7
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 7.5e-09 64.7 54 53.7
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.8e-09 64.3 53 56.6
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.8e-09 64.3 53 54.7
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 9.8e-09 64.3 54 53.7
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.3e-08 63.9 54 53.7
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-08 63.9 54 53.7
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-08 63.9 51 56.9
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.3e-08 63.9 54 51.9
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.7e-08 63.5 54 53.7
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.7e-08 63.5 53 54.7
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.7e-08 63.5 53 47.2
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.2e-08 63.2 52 57.7
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.2e-08 63.2 52 57.7
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.2e-08 63.2 54 57.4
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.2e-08 63.2 54 57.4
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.2e-08 63.2 54 57.4
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.2e-08 63.2 54 57.4
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.9e-08 62.8 54 51.9
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 2.9e-08 62.8 54 51.9
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.9e-08 62.8 54 57.4
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 2.9e-08 62.8 54 51.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.9e-08 62.8 53 56.6
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.9e-08 62.8 53 56.6
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 2.9e-08 62.8 54 53.7
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.9e-08 62.8 54 53.7
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 2.9e-08 62.8 53 47.2
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 3.7e-08 62.4 54 51.9
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 3.7e-08 62.4 59 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 4.9e-08 62.0 58 51.7
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 4.9e-08 62.0 54 50.0
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 4.9e-08 62.0 54 50.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 4.9e-08 62.0 54 51.9
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.9e-08 62.0 54 55.6
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.9e-08 62.0 51 54.9
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.9e-08 62.0 51 54.9
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 4.9e-08 62.0 54 51.9
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.9e-08 62.0 53 54.7
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 6.4e-08 61.6 54 53.7
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 6.4e-08 61.6 54 50.0
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 6.4e-08 61.6 53 50.9
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 6.4e-08 61.6 54 51.9
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 6.4e-08 61.6 54 50.0
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 8.3e-08 61.2 54 51.9
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 8.3e-08 61.2 54 57.4
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 8.3e-08 61.2 53 52.8
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.4e-07 60.5 54 48.1
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.4e-07 60.5 56 55.4
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.9e-07 60.1 55 52.7
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.9e-07 60.1 69 47.8
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.4e-07 59.7 54 51.9
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.4e-07 59.7 44 59.1
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 9.2e-07 57.8 54 48.1
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 9.2e-07 57.8 51 49.0
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.6e-06 57.0 44 54.5
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.6e-06 57.0 44 56.8
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.5e-06 55.8 53 54.7
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.6e-06 55.5 55 50.9
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 6.0e-06 55.1 44 50.0
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 7.8e-06 54.7 54 44.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 7.8e-06 54.7 48 47.9
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 7.8e-06 54.7 43 55.8


User provided reference genes

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