Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 6.8e-142 507.3 251 100.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.7e-116 421.8 253 81.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.6e-74 283.5 233 58.4
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.5e-74 282.3 232 57.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.3e-73 280.4 236 57.6
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.0e-73 279.3 232 58.2
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 5.1e-73 278.5 230 57.8
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.5e-72 276.9 248 54.8
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-72 276.9 234 58.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.9e-72 276.6 247 55.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.3e-72 275.4 239 56.9
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 5.7e-72 275.0 234 57.7
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 7.4e-72 274.6 231 59.7
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.6e-72 274.2 239 57.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 9.6e-72 274.2 231 56.3
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-71 273.9 239 56.9
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.3e-71 273.9 238 58.4
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.8e-71 272.7 251 53.4
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 6.2e-71 271.6 244 55.7
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.1e-70 270.8 233 57.1
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 3.1e-70 269.2 236 56.8
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.1e-70 269.2 244 55.3
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 4.1e-70 268.9 248 52.0
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 4.1e-70 268.9 248 55.2
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 9.0e-70 267.7 235 56.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.2e-69 267.3 230 57.8
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.5e-69 266.9 236 56.4
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 3.4e-69 265.8 253 51.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 4.5e-69 265.4 219 58.4
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.6e-69 264.6 233 53.6
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-68 263.8 226 54.9
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.7e-68 263.5 226 54.9
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.8e-68 262.3 239 56.9
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 6.5e-68 261.5 233 55.4
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.4e-67 260.4 232 56.9
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.2e-67 259.2 237 55.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.2e-67 258.8 202 59.9
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 4.2e-67 258.8 231 55.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 7.2e-67 258.1 231 53.2
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 9.3e-67 257.7 231 55.4
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.6e-66 256.9 264 49.2
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.6e-66 256.9 233 53.6
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.1e-66 256.5 238 54.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 6.1e-66 255.0 220 57.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 6.1e-66 255.0 233 55.4
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 6.1e-66 255.0 232 55.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 7.9e-66 254.6 238 53.8
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 7.9e-66 254.6 238 53.8
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.0e-65 254.2 242 51.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.3e-65 253.1 225 56.0
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 2.3e-65 253.1 231 52.4
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-65 253.1 233 55.8
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 3.9e-65 252.3 259 49.0
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 8.7e-65 251.1 246 54.9
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.7e-65 251.1 245 50.6
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.1e-64 250.8 251 51.0
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.5e-64 250.4 244 51.6
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.5e-64 250.4 233 54.5
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.5e-64 250.4 226 54.0
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.5e-64 249.6 231 54.5
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 3.3e-64 249.2 233 54.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.3e-64 248.8 233 51.5
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.3e-64 248.8 231 51.5
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.3e-64 248.8 225 54.7
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.3e-64 248.8 231 54.5
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 5.7e-64 248.4 224 53.6
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 7.4e-64 248.1 243 50.2
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 7.4e-64 248.1 245 51.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-63 247.3 180 64.4
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.6e-63 246.9 237 54.4
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.2e-63 246.5 238 53.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.2e-63 246.5 251 52.6
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.8e-63 246.1 232 53.4
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 2.8e-63 246.1 233 54.5
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.8e-63 246.1 233 53.6
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 3.7e-63 245.7 227 52.9
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 4.8e-63 245.4 190 61.1
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 6.3e-63 245.0 233 53.6
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 8.2e-63 244.6 230 54.8
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 8.2e-63 244.6 225 53.3
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.1e-62 244.2 226 55.3
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.1e-62 244.2 240 51.2
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.8e-62 243.4 224 56.2
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.1e-62 242.7 235 53.6
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 3.1e-62 242.7 175 65.1
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.1e-62 242.7 226 54.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.1e-62 242.3 215 57.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.1e-62 242.3 215 57.2
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 4.1e-62 242.3 197 59.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 5.3e-62 241.9 241 51.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 1.5e-61 240.4 268 47.4
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.4e-61 239.2 183 62.8
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 4.5e-61 238.8 214 56.1
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 4.5e-61 238.8 175 64.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 5.9e-61 238.4 189 59.3
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 5.9e-61 238.4 175 64.6
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 5.9e-61 238.4 231 52.4
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 7.7e-61 238.0 229 52.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-60 236.9 239 50.6
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.7e-60 236.9 232 52.2
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.2e-60 236.5 176 64.8
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.9e-60 236.1 231 51.1
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.0e-60 235.3 225 52.9
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 6.5e-60 235.0 228 52.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.5e-60 235.0 228 52.6
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.4e-59 233.8 173 61.3
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 2.5e-59 233.0 155 70.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.2e-59 232.3 173 61.3
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.6e-58 230.3 175 59.4
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.7e-58 229.6 226 54.0
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 4.6e-58 228.8 172 62.8
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 4.6e-58 228.8 192 58.9
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 6.1e-58 228.4 226 52.2
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.0e-57 227.6 196 57.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.8e-57 226.9 220 52.7
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.3e-57 226.5 215 55.3
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.1e-57 225.3 264 46.6
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 6.7e-57 224.9 251 46.2
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.5e-56 223.0 208 52.4
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 3.3e-56 222.6 177 59.3
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.3e-56 222.2 189 55.6
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.7e-56 221.9 220 51.4
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 9.7e-56 221.1 178 60.1
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.2e-55 219.9 189 57.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.8e-55 218.8 204 52.9
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 6.3e-55 218.4 185 57.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.8e-54 216.9 173 57.2
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.2e-53 214.2 224 49.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.5e-53 212.2 225 49.8
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.2e-52 209.9 190 54.2
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 6.5e-52 208.4 188 52.1
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 6.5e-52 208.4 181 58.0
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.1e-51 207.6 159 59.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-51 207.2 175 58.3
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 7.2e-51 204.9 170 57.1
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 7.2e-51 204.9 170 57.1
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.4e-51 204.5 176 55.7
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.7e-50 203.0 162 59.3
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.8e-49 200.3 316 38.3
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.5e-48 197.2 197 52.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-47 194.1 126 71.4
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 2.4e-46 189.9 185 51.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.4e-46 189.9 125 66.4
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.0e-46 188.3 140 65.0
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.5e-43 179.9 165 52.7
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.2e-42 177.6 125 62.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-42 177.2 211 46.0
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.6e-42 177.2 211 46.0
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.0e-41 174.5 147 58.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 5.3e-38 162.2 168 48.8
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.6e-34 149.4 200 41.5
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.5e-27 127.5 116 54.3
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.2e-21 107.8 113 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.6e-21 107.5 134 46.3
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.5e-16 90.9 189 30.2
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.9e-15 85.9 60 60.0
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 7.8e-13 78.6 60 56.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.3e-11 72.8 48 60.4
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 9.5e-11 71.6 108 39.8


User provided reference genes

Program Settings