Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 0.0e+00 1094.7 520 100.0
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.3e-163 580.5 529 52.9
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.4e-162 577.0 524 54.8
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 1.8e-160 570.1 525 52.4
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 1.6e-158 563.5 524 51.9
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 7.7e-156 554.7 527 51.6
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 8.5e-155 551.2 525 51.2
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 1.2e-153 547.4 524 51.5
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 2.1e-153 546.6 527 51.2
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 6.7e-152 541.6 483 53.4
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 8.8e-152 541.2 527 51.6
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 9.7e-151 537.7 523 50.9
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 1.3e-150 537.3 525 50.9
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 1.3e-150 537.3 522 50.0
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 4.8e-150 535.4 522 49.6
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 8.2e-150 534.6 523 50.9
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 1.4e-149 533.9 523 49.7
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 1.8e-149 533.5 524 50.4
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 3.1e-149 532.7 526 50.2
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 5.3e-149 531.9 522 50.0
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 1.2e-148 530.8 524 50.8
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 1.5e-148 530.4 526 49.8
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 2.6e-148 529.6 349 73.1
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 3.4e-148 529.3 527 50.1
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 4.5e-148 528.9 525 50.1
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 4.5e-148 528.9 526 50.6
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 4.5e-148 528.9 529 50.7
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 1.0e-147 527.7 528 49.6
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 1.7e-147 526.9 532 49.8
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 2.2e-147 526.6 485 51.5
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 8.5e-147 524.6 525 50.1
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.4e-146 523.9 529 48.8
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 2.5e-146 523.1 522 48.7
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 3.2e-146 522.7 525 48.6
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 5.5e-146 521.9 522 50.4
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 2.7e-145 519.6 524 50.4
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 3.6e-145 519.2 497 50.9
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 6.1e-145 518.5 528 48.7
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 7.9e-145 518.1 524 49.8
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 1.4e-144 517.3 522 50.0
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 5.1e-144 515.4 524 48.3
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 8.8e-144 514.6 526 47.9
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 2.6e-143 513.1 555 47.2
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 3.3e-143 512.7 559 47.6
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 5.7e-143 511.9 524 47.7
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 1.7e-142 510.4 525 49.7
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 2.8e-142 509.6 522 47.9
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 1.4e-141 507.3 524 49.4
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 1.4e-141 507.3 500 48.8
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 3.1e-141 506.1 524 49.0
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 9.1e-141 504.6 550 47.6
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 9.1e-141 504.6 525 49.0
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.2e-140 504.2 526 48.3
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 1.5e-140 503.8 556 47.1
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 3.5e-140 502.7 525 48.4
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 1.0e-139 501.1 524 48.3
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 1.1e-138 497.7 533 47.7
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 2.1e-137 493.4 530 48.5
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 6.7e-136 488.4 523 48.0
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 8.8e-136 488.0 547 45.0
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 8.8e-136 488.0 523 46.5
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 2.0e-135 486.9 522 47.3
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 2.6e-135 486.5 524 46.8
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 4.4e-135 485.7 450 52.2
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 7.5e-135 485.0 523 47.4
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 1.7e-134 483.8 518 46.9
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.7e-134 482.6 523 47.0
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 6.3e-134 481.9 527 47.4
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 8.2e-134 481.5 468 49.6
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.1e-133 481.1 523 47.2
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.4e-133 480.7 492 48.0
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 3.5e-132 476.1 611 42.4
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 3.8e-131 472.6 523 45.9
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.5e-130 469.9 523 45.7
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.0e-128 464.5 475 49.3
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.0e-128 463.0 525 45.9
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 4.0e-128 462.6 484 49.4
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 5.2e-128 462.2 525 45.9
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 6.8e-128 461.8 481 47.6
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 3.4e-127 459.5 524 44.5
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 4.8e-126 455.7 523 44.6
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.4e-125 453.4 522 45.0
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 2.7e-124 449.9 523 43.8
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 1.5e-122 444.1 524 43.3
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 1.9e-122 443.7 524 44.5
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 3.2e-122 443.0 418 51.4
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 3.2e-122 443.0 523 44.0
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 5.5e-122 442.2 522 43.7
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 2.7e-121 439.9 524 43.7
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 3.6e-121 439.5 525 44.0
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 4.7e-121 439.1 565 43.0
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 1.0e-120 438.0 523 43.4
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.4e-120 437.6 522 42.9
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 8.8e-120 434.9 523 44.2
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.2e-119 434.5 524 44.5
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 2.6e-119 433.3 485 44.1
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 5.7e-119 432.2 530 45.5
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.8e-118 429.9 536 45.1
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.8e-117 427.2 396 52.5
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 9.2e-117 424.9 430 48.8
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 3.6e-113 412.9 520 41.9
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 4.9e-110 402.5 260 68.5
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.4e-109 400.2 592 38.3
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.0e-104 384.8 532 40.2
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.2e-103 381.3 259 68.7
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 6.0e-100 369.0 260 65.8
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 2.3e-99 367.1 414 44.7
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 6.6e-99 365.5 359 52.1
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 3.6e-97 359.8 421 43.7
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.3e-96 357.1 311 56.3
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 4.0e-96 356.3 585 37.3
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 8.9e-96 355.1 260 64.2
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 1.5e-95 354.4 419 45.6
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 1.7e-94 350.9 260 63.5
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 7.8e-92 342.0 420 43.6
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 5.1e-91 339.3 488 40.2
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 1.2e-89 334.7 305 54.4
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 1.1e-88 331.6 264 60.6
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 2.2e-86 323.9 260 60.4
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 2.7e-84 317.0 347 47.3
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 2.7e-84 317.0 251 59.4
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 2.3e-83 313.9 211 68.7
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 2.5e-82 310.5 268 54.5
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 3.4e-79 300.1 302 49.7
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 4.4e-79 299.7 223 65.9
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 4.4e-79 299.7 257 57.2
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 9.9e-79 298.5 180 74.4
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 5.4e-77 292.7 257 56.4
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 3.0e-75 287.0 221 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 4.3e-74 283.1 257 52.5
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 7.3e-74 282.3 238 57.1
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 2.2e-70 270.8 264 50.4
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 4.6e-68 263.1 177 66.1
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 3.0e-67 260.4 256 52.7
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 5.6e-66 256.1 257 51.0
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 9.6e-66 255.4 262 48.5
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 3.6e-65 253.4 261 49.0
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.4e-61 241.5 231 52.4
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.2e-61 240.4 257 47.1
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 7.1e-61 239.2 163 67.5
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 3.9e-59 233.4 227 51.5
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 3.4e-55 220.3 142 69.0
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 4.6e-44 183.3 207 44.9
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 2.3e-43 181.0 164 53.0
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 2.9e-38 164.1 182 45.1
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 6.5e-38 162.9 260 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 1.5e-31 141.7 131 51.9
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 7.2e-29 132.9 101 62.4
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 7.2e-29 132.9 161 42.9
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 2.7e-28 131.0 112 51.8
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 2.6e-26 124.4 70 74.3
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 2.8e-25 120.9 93 63.4
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 8.2e-25 119.4 85 62.4
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 3.1e-24 117.5 93 64.5
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.1e-24 117.5 252 33.3
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 5.0e-22 110.2 115 45.2
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 3.2e-21 107.5 69 62.3
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 3.3e-18 97.4 71 63.4
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 1.7e-17 95.1 54 70.4
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 4.8e-17 93.6 65 63.1
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 4.8e-17 93.6 75 57.3
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.4e-16 91.3 81 58.0
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 4.5e-15 87.0 108 48.1
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 5.9e-15 86.7 144 34.7
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.1e-13 82.4 55 69.1
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 1.5e-13 82.0 91 45.1
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 9.4e-13 79.3 62 58.1
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 6.1e-12 76.6 93 45.2
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 8.0e-12 76.3 56 58.9
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.3e-09 68.9 59 61.0
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.2e-09 68.2 65 47.7
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.3e-09 66.6 65 49.2
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 1.4e-08 65.5 63 49.2
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 1.4e-08 65.5 63 49.2
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 1.4e-08 65.5 63 49.2
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 3.1e-08 64.3 73 43.8
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 4.1e-08 63.9 47 59.6
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 7.0e-08 63.2 42 59.5
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 1.6e-07 62.0 40 60.0
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 3.5e-07 60.8 77 40.3
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 3.5e-07 60.8 73 42.5
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 3.5e-07 60.8 73 42.5
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 1.3e-06 58.9 64 43.8
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 5.0e-06 57.0 43 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2935 Anthoceros agrestis HOM05D000219 ORTHO05D021059 8.5e-06 56.2 55 47.3


User provided reference genes

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